Pairwise Alignments

Query, 324 a.a., putative anti-sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 340 a.a., sigma factor regulatory protein, FecR/PupR family from Bacteroides ovatus ATCC 8483

 Score =  124 bits (312), Expect = 3e-33
 Identities = 91/322 (28%), Positives = 166/322 (51%), Gaps = 20/322 (6%)

Query: 5   NIITRIIKKFLSGRFSVETEEKVQRWI-MKEENAE-EKEKASLEYWNEL-DTEADSKTYS 61
           NI   ++  + SG    + +E+V+ WI + EEN +  K+   + +  ++ DT        
Sbjct: 7   NIDEALLLLYFSGTLGEKEKEEVENWISLSEENRKIAKQICYIHHVTDIIDTVKQIDPKQ 66

Query: 62  ALERVNLRTGYNKEHLENIVLYHKFVRIVAVV-IPICLLAGGLLYYIPSENEQ----IEI 116
           AL +++ R    K+    I  +   +R  AV+ IP+ L      Y++ ++++     +EI
Sbjct: 67  ALVKLDKRLSKRKK----INWWEWGIRAAAVLFIPLFL---SFFYFVFNQDKNYDRYVEI 119

Query: 117 STAYGEQKRLVLPDSSEVWLNAGSTITYPKTFTKENRVVTLDGEAYFSVRKDDAKPFIVE 176
            +  G   ++ LPD + VWLN+ S + YP +F  E R V L GEAYFSV+KD+ + F+V+
Sbjct: 120 RSNPGMMTKVELPDGTWVWLNSASYLKYPVSFEGEYRKVELLGEAYFSVQKDNGRKFLVD 179

Query: 177 TSQ-LSVKVLGTKFNVKAYANDANITTTLTSGKVEVSTQSRPPQ---TLKPNEQLTYDKS 232
             + + ++VLGT+FNV AY +D  +  TL +G+V+   Q +  +   +++P +++ Y+  
Sbjct: 180 VGKGIELEVLGTEFNVDAYPDDKFVAATLVTGRVKFHCQQKGREVTYSMQPGQKVIYNLL 239

Query: 233 TSDIEISTVDTVDTNSWVKGKIIFTNATAEEIFRTLERRYDTVIDHSTDFSASRRYTVKF 292
              +  +T       +W  G+II+ +   E+  RTL +R+D              +T  F
Sbjct: 240 DEKLLCTTTFVESDIAWKSGRIIYRDTPLEDALRTLSKRFDVEFRIVNPLLKKYCFTGTF 299

Query: 293 LKDENLDEMLNILGDIIGFSYR 314
           + ++ LD++L       G  YR
Sbjct: 300 I-NQRLDKILEHFKIASGVRYR 320