Pairwise Alignments

Query, 324 a.a., putative anti-sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 331 a.a., sigma factor regulatory protein, FecR/PupR family from Bacteroides ovatus ATCC 8483

 Score =  126 bits (317), Expect = 6e-34
 Identities = 95/340 (27%), Positives = 163/340 (47%), Gaps = 32/340 (9%)

Query: 1   MEKSNIITRIIKKFLSGRFSVETEEKVQRWIMKEENAEEKEKASLEYWNE----LDTEAD 56
           ME+ + I  +++KF     S E    +  WI K     E      + W E    +D   +
Sbjct: 1   MEQHDYIV-LLEKFFKKEASSEERRILIEWIRKPGIRNEFNLLCEQMWKEAAVEIDKTVE 59

Query: 57  SKTYSALERVNLRT----GYNKEHLENIVLYHKFVRIVAVVIPICLLAGGLLYYIPSEN- 111
            + ++ L+R NL         K   + I+    +     +++P+CL   GL  Y   E+ 
Sbjct: 60  EEMWNHLQR-NLDEPKILSPKKRRWQPII----YKVAATILLPVCL---GLATYFGVEHM 111

Query: 112 -----EQIEISTAYGEQKRLVLPDSSEVWLNAGSTITYPKTFTKENRVVTLDGEAYFSVR 166
                +   ++  YG++  L LPD ++VWLN+ + ++Y   + K +R + LDGEAYF V 
Sbjct: 112 NKVSQDPFMVAVDYGQKANLTLPDGTKVWLNSATHLSYDAEYNKSDRKIYLDGEAYFEVA 171

Query: 167 KDDAKPFIVETSQLSVKVLGTKFNVKAYANDANITTTLTSGKVEVSTQSRPPQTLKPNEQ 226
           K+  K FIV  + L ++ LGT F+VK Y +D ++TT L  G V+VS ++     LKP E+
Sbjct: 172 KNKDKRFIVCCNDLEIEALGTTFDVKGYCDDHSVTTLLAEGSVKVSNKT-DVTLLKPGEK 230

Query: 227 LTYDKSTSDIEISTV-DTVDTNSWVKGKIIFTNATAEEIFRTLERRYDTVIDHSTDFSAS 285
           + Y K+      S + D  + + W    +IF +++  EI  TLER Y   +     F + 
Sbjct: 231 VEYHKNKQTFTKSPISDMREIDFWRNNMLIFNSSSLAEIATTLERMYGVKV----VFDSE 286

Query: 286 RRYTVKF---LKDENLDEMLNILGDIIGFSYRQSGNKIII 322
           +   V F   +++ +L  +  I+      +Y   G+ + I
Sbjct: 287 KLKNVLFSGTIRNSSLHNVFYIISLTYPLTYELEGDTVRI 326