Pairwise Alignments

Query, 299 a.a., transcriptional regulator (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 305 a.a., transcription regulator, AraC family (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  266 bits (680), Expect = 4e-76
 Identities = 135/295 (45%), Positives = 195/295 (66%), Gaps = 2/295 (0%)

Query: 4   KVLKIGSVHQCNCCMGSKTLHPLVSVIDLSKADL-SSHTDFKFGFYTILLSECKCEAYRY 62
           +++ I SV + N   G +T HPLVS+IDL+K+    +   F++  Y + L   KC   +Y
Sbjct: 7   EMIVIDSVDRYNEIFGLETRHPLVSIIDLAKSTTWPTRAWFRYEVYALYLKNVKCGDIKY 66

Query: 63  GHQYYDFSDGTLLCLTPGESISMKDSDNTRPSKGWILAFHPDLICGTALGANIRDYTFFS 122
           G QYYD+ DGT++C  PG+   ++   N +P+   IL FHPDLI GTALG  I+ Y+FFS
Sbjct: 67  GRQYYDYQDGTIVCFAPGQITDLEMLPNIQPNAHGIL-FHPDLIRGTALGQEIKKYSFFS 125

Query: 123 YRPEEALHVSLREKQVILELLDKINEELQRCIDCYSQKIISKYIELLLDYCERFYERQFI 182
           Y   EALH+S  E+Q +++ L KI  EL+  ID +S+++I   I LLLDYC RFYERQF 
Sbjct: 126 YETNEALHISEEERQTVMDCLQKITIELEHSIDKHSRRLICANIGLLLDYCMRFYERQFD 185

Query: 183 TRNEANKKIIERFDRLLDDHFNTIQSQSSDLPTIEECVRVLRLSPAYFNDLLEYETGKSY 242
           TRN  NK II RF+ LL+++F     Q+  LP+++     + LS  YF D++  +TGK+ 
Sbjct: 186 TRNGVNKDIIVRFEHLLNEYFEGDAPQNQGLPSVKYFADKVFLSANYFGDMVRKQTGKTV 245

Query: 243 KEYLQFKRFEIAKEWLINTDKTLSQIAQELGFRNPQYFSRLFKKITGCLPNDFKM 297
            EY+Q K  E+AKE L++++KT+SQIA E+GF+ PQ+ SR+FK+I G  PN F++
Sbjct: 246 SEYIQDKMIELAKEQLMSSNKTMSQIAYEIGFQYPQHLSRMFKRIVGMTPNQFRL 300