Pairwise Alignments

Query, 499 a.a., outer membrane protein TolC, putative (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 492 a.a., putative outer membrane protein OprM precursor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  276 bits (705), Expect = 2e-78
 Identities = 167/495 (33%), Positives = 264/495 (53%), Gaps = 12/495 (2%)

Query: 1   MKKSSVLFVLMAASGICFS-SVYAQKRLVLDLNQTIALANDSSLESFRTQNMYLSGYWEY 59
           MKK S+LFVL A   IC   +V AQK   + LN+ IA+A   S+++    N   + YWEY
Sbjct: 1   MKKKSILFVLAA---ICLPLAVSAQKEREITLNEAIAMARMQSVDAAVALNELKTSYWEY 57

Query: 60  RTYRANRLPSLTMDLTPAQYNRDITKRYDSGQDLD---VYRTQQSYYAYGGLSVRQNLDL 116
           RT+RA+ LP + +  T   YN    K Y S Q+ D    +    +    G LS+ QN+ L
Sbjct: 58  RTFRADLLPEINLKGTLPNYN----KSYGSYQNPDGSYSFVRNSALGLSGELSIDQNIWL 113

Query: 117 TGGTFYLESNLAYMRNFGDNSATQFTSVPIRLGYSQSLVGYNPFKWDRKIEPLKYERVKK 176
           TGG   L S+L Y++  G++      SVP+ L  +Q ++G N  KW+R+IEP++Y   K 
Sbjct: 114 TGGQLSLTSSLDYLKQLGNSGDRHLMSVPVTLKLTQPILGVNNVKWNRRIEPVRYAEAKA 173

Query: 177 EFLYNVEKVSETATNYFFSLAMAQAEYKLAKENLASTDTLYRIGQQRHRIAAISQADLLT 236
           EF+   E+V+  A  Y+F L +A+     A++NL + + LY +   + ++  IS+ +LL 
Sbjct: 174 EFITATEEVTMRAITYYFDLLLAKETLGTARQNLTNANQLYEVAIAKRKMGQISENELLQ 233

Query: 237 LKLDKVNAQNTLQNRASALKRAMFSLASFLNLDKNTQIELELPSRPSMMEIPVDEALRWG 296
           LKL  +NA+  L    S L   MF L +FL + ++  +   +P      ++  +  L   
Sbjct: 234 LKLSALNAKAALTEAESDLNAKMFQLRAFLGVGEDEILRPVVPESVDCGKMEYNMVLNKA 293

Query: 297 RSNNPQLLELKQNVLEAERNVDRTKKESRFNASVNASIGFNQVAENFGDVYHKPMQQDLV 356
              N     +++  LEA+  V   +   R + ++ AS+G+   +     VY       +V
Sbjct: 294 LERNSFAQNIRRRQLEADYAVATARGNLR-SINLFASVGYTGESRELSSVYRNLQDNQIV 352

Query: 357 AVSVSIPLLDWGVRKGKYNMARNNLNVVKISARQDEISIEEEVIMTVSDFNIQQQLIASA 416
            V V IP+LDWG R+GK  +A++N +VV    RQ++I+  +++ + V  FN Q Q +  A
Sbjct: 353 QVGVQIPILDWGKRRGKVRVAKSNRDVVLSKIRQEQINFNQDIFLLVEHFNNQAQQLEIA 412

Query: 417 EEALDLAILAYNETRQRFIIGKADINSLTLSLNRQQEAQRNYISALQNYWLNYYKIRRLT 476
           +EA  +A   Y  + + F+IGK +   L  + N + EA+R +IS L  YW  +Y+IR LT
Sbjct: 413 KEADGIAQQRYKTSIETFLIGKINTLDLNDAQNAKDEARRKHISELYYYWYYFYQIRSLT 472

Query: 477 LFDFATKLSLSDRFD 491
           L+DF     L   FD
Sbjct: 473 LWDFQANTELEADFD 487