Pairwise Alignments

Query, 1035 a.a., putative cation efflux system (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 1058 a.a., multidrug resistance protein mexB (multidrug-efflux protein) (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  273 bits (697), Expect = 6e-77
 Identities = 252/1083 (23%), Positives = 477/1083 (44%), Gaps = 99/1083 (9%)

Query: 6    IQRPIAVLMAFTACFIIGLVTYSTLPISLLPNIAIPEITVQVASANTSARELENTIVKPL 65
            I+RP+  +        IGL++  TLP+   P+IA P + V  +     A  + N+++ PL
Sbjct: 7    IKRPVMAISISVLILAIGLISLFTLPVEQYPDIAPPTVYVSASYTGADAEAVMNSVIMPL 66

Query: 66   RGQLIQVSTLKDIHSE-SRDGAGIIRLSFEYGTNTDLAFIEVNEKIDAAMNYLPKEAERP 124
               +  V  +  I S  S  G  II++ F+ GT+ D+A + V  ++  A   LP E  + 
Sbjct: 67   EESINGVEDMMYITSSASNAGLAIIQVYFKQGTDPDMAAVNVQNRVAKAQGLLPAEVTKV 126

Query: 125  KV--IKASATDIPVFYLNLTLKNDSAYGATEQHSFLELCEFAESVIKRRIEQLEEVAMVD 182
             V  +K   + + +  L  T   D  Y  T   ++L++    +    +RIE + +V  ++
Sbjct: 127  GVSTMKRQTSFLQIGALVCT---DGRYDQTFLANYLDINVIPQI---KRIEGVGDV--ME 178

Query: 183  VTGILERQVQIVPDKDKLAMMGLSIGDIESALSSNNVEPGSMTVRDG---YYEYNIKFST 239
            +      ++ + P++  +A  GL   DI   L   N+E  + ++ +     +++ +K+  
Sbjct: 179  LGDTYSMRIWLKPER--MAQYGLVPSDITGVLGEQNIEAPTGSLGESSQNVFQFTMKYRG 236

Query: 240  LLRTAEDVENIYLRKGD--RIVQLKDFCKVSVVPVKEKGVSLSNGKRAVSLAVIKQADEN 297
             L++ E+ +N  +R  +   I++LKD   V +  +     S  + + AV   + + A  N
Sbjct: 237  RLKSVEEFQNTVVRSREDGSILRLKDVADVELGTMTYSFRSEMDSQPAVLYMIFQTAGSN 296

Query: 298  MDKMKQALVGTMTYFQLVYPE-IDFSISRNQTELLDYTISNLQQNLSLGFLFICLVAVLF 356
               + + +   M   +   PE  +F    +  + L  +I N+ + L +  + + LV   F
Sbjct: 297  ATAVNKEITAQMERMEKNLPEGTEFVTMMSSNDFLFASIHNVVETLIIAIILVILVVYFF 356

Query: 357  LGDVKSPLVIGLSMVVSIVISFVFFYLCNMSLNIISLAGLILALGMMIDSSIIVTENISQ 416
            L D+KS L+  +S++VS+V +F        SLNI++L  L+LA+G ++D +I+V E +  
Sbjct: 357  LQDLKSTLIPSISIIVSLVGTFACLVAAGFSLNILTLFALVLAIGTVVDDAIVVVEAVQS 416

Query: 417  YRERGY-SLRRACVTGTSEVVTPMLSSSLTTIAVFAPLIFMSGIAGAIFFDQAFSVTVGL 475
              + GY S   A      +V   ++S +   +AVF P+ FM G +G  +     ++   +
Sbjct: 417  KFDAGYKSPYLATKDAMGDVTMAIVSCTCVFMAVFIPVTFMGGTSGVFYTQFGITMATAV 476

Query: 476  MVSYLTGIMLLPVLYLLVYRTGVRTRKWKWLSFKFN---NPIKDHTLDRFYDAGVDWVFR 532
             +S ++ + L P L  ++ R    T+  K ++ +     N   +  L + Y  GV +  R
Sbjct: 477  GISMISALTLCPALCAIMMRPSDGTKSAKSINGRVRAAYNASFNAVLGK-YKKGVMYFIR 535

Query: 533  HKTFSVLFCVISIPLCVFFFFFIDKERMPDIEENELIARIEWNENIHVDENKRRVDELFK 592
            H+         +I L V+         +P  ++  ++  +  +    ++E  + +D L  
Sbjct: 536  HRWMVWTSLAATIVLLVYLMSTTKTGLVPQEDQGVIMVNVSISPGSTLEETTKVMDRLEN 595

Query: 593  ELKD-EVLEQTASIGRQDFILNRERELSSSEAELYFRTET------SNAIASLEQAVYRK 645
             LKD   +E  A +     I  +     +    L   +E       S+A+AS   A ++ 
Sbjct: 596  ILKDTPEIEHYARVAGYGLISGQGTSYGTIIVRLKDWSERKGKEHGSDAVASRLNAQFQS 655

Query: 646  LKERYPLSVISFSPP---------------------------ETVFEKLFVTGEPDVVAE 678
            +KE     + SF P                            +   + L    +   VA 
Sbjct: 656  IKE---AQIFSFQPAMIPGYGMGNSLELNLQDMTGGDLATFYDASTQFLNALNQRPEVAM 712

Query: 679  FYTRNKAEAPKAEAIRSVEQELGRKTGINPTGIAFENQLNLSISKEKLLLYRVSYNELYR 738
             YT      P+      V+    ++ GI+P+ +   + +        +  Y   Y ++YR
Sbjct: 713  AYTSYAINFPQLSV--EVDAAKCKRAGISPSAVL--DAVGSYCGGAYISNYN-QYGKVYR 767

Query: 739  VLKTAFRENSVTMLHSYQQYLPINIAGDEKTVNEVLQETLVQTQPDNRGNVDFIPLRELI 798
            V+  A  E  +                DE+ +N +      +  P ++    F+ L++++
Sbjct: 768  VMMQASPEYRL----------------DEQALNNMFVRNGTEMAPVSQ----FVTLKQVL 807

Query: 799  NVAPAEDL---KSITSGRNGEYVPFDFYGVQDANRLMREVKQVAEETGDWDTGFSGSIFS 855
                A       +IT+  N    P D Y    +  + + +++VA E+     G+     +
Sbjct: 808  GPETANRFNLYSTITANVN----PADGY---SSGEVQKVIEEVAAESLPIGYGYEYGGMA 860

Query: 856  NKEMLD---ELVVILLISLLLMYFILAAQFESFLQPLLVLAEIPIDVAFALLLLWICGHT 912
             +E      + V I  I + L+Y ILA  +ESFL P  V+  +P  +  + L   I G  
Sbjct: 861  REEASSGGAQTVFIYAICIFLIYLILACLYESFLVPFAVIFSVPFGLMGSFLFAKILGLE 920

Query: 913  LNLMSAIGLIVTCGIVINDSILKLDAINELRKAGVPLLEAIHEAGRRRLRPIIMTSLTTI 972
             N+    G+I+  G++   +IL  +   E R+ G+ ++E+ + A + RLRPI+MT LT I
Sbjct: 921  NNIYLQTGVIMLIGLLAKTAILITEYAIERRRKGMGIVESAYSAAQVRLRPILMTVLTMI 980

Query: 973  FAMVPLLFSSDMGSELQKPLSIAMIGTMSIGTAVSLFIIPLLYWFIYRGKSGNHKPNEKH 1032
            F M+PL+FSS  G+     L   ++G M++GT   LF++P+ Y      +    KP E+ 
Sbjct: 981  FGMLPLMFSSGAGANGNSSLGTGVVGGMAVGTVALLFVVPVFYIIFEYLQEKIRKPMEEE 1040

Query: 1033 VEL 1035
             ++
Sbjct: 1041 ADV 1043