Pairwise Alignments

Query, 1035 a.a., putative cation efflux system (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 1046 a.a., AcrB/AcrD/AcrF family protein from Agrobacterium fabrum C58

 Score =  275 bits (703), Expect = 1e-77
 Identities = 242/1041 (23%), Positives = 456/1041 (43%), Gaps = 68/1041 (6%)

Query: 4    FLIQRPIAVLMAFTACFIIGLVTYSTLPISLLPNIAIPEITVQVASANTSARELENTIVK 63
            F I RP+A  +      + GL  +  LP++ LP +  P I V  + +  S + +  ++  
Sbjct: 5    FCINRPVATTLLAIGLVLAGLAGFRLLPVAALPKVDFPTINVSSSLSGASPQTMATSVTT 64

Query: 64   PLRGQLIQVSTLKDIHSESRDGAGIIRLSFEYGTNTDLAFIEVNEKIDAAMNYLPKE-AE 122
            PL  Q   +  + +I + +  G   I L F+   + D A  +V   I  A   LP     
Sbjct: 65   PLVKQFETIPGVSEISATNTLGNSSIVLQFDLNRDIDAAAADVQAAISRAQRQLPSNMTT 124

Query: 123  RPKVIKASATDIPVFYLNLTLKNDSAYGATEQHSFLELCEFAESVIKRRIEQLEEVAMVD 182
             P   K +  D PV  L +  K         +    ++ E AE++I   +  +  VA V 
Sbjct: 125  TPSYRKTNPADAPVLLLAVNSK---------EMPTSKVDEIAENIISPLLSTISGVAQVS 175

Query: 183  VTGILERQVQIVPDKDKLAMMGLSIGDIESALSSNNVEPGSMTVRDGYYEYNIKFSTLLR 242
            + G     V+I  D  +L   GL +  + +A++  N +     ++       I+  T   
Sbjct: 176  IYGAQTYAVRIGLDPTQLQARGLGVDTVTTAITQANNQVPVGALQTDNQRLTIEADTQRT 235

Query: 243  TAEDVENIYLRKGDRI-VQLKDFCKVSVVPVKEKGVSLSNGKRAVSLAVIKQADENMDKM 301
             A    ++ +   +   + L D   V+         S  +G++A+ LAV +Q D N  ++
Sbjct: 236  NAAAFRSLVVSTNNGAPIHLGDIANVTDSIDNTNAGSWFDGEQAIILAVQRQPDANTVEV 295

Query: 302  KQALVGTMTYFQL-VYPEIDFSISRNQTELLDYTISNLQQNLSLGFLFICLVAVLFLGDV 360
              A+   +   Q  + P ++  +  + +  +   IS++Q  L L    +  V  LF G +
Sbjct: 296  VDAIKAKLPALQQQLPPSVNIHVMNDASTAIKDAISDVQFTLFLTIGLVVAVIYLFTGHL 355

Query: 361  KSPLVIGLSMVVSIVISFVFFYLCNMSLNIISLAGLILALGMMIDSSIIVTENISQYRER 420
             + ++ GL++ +S++ +F   Y+   S++ ISL GL L++G+++D +I++ ENI +  E+
Sbjct: 356  TATIIPGLAVPLSLITAFGMMYVLGYSIDNISLLGLTLSVGLVVDDAIVMLENILRLHEK 415

Query: 421  GYSLRRACVTGTSEVVTPMLSSSLTTIAVFAPLIFMSGIAGAIFFDQAFSVTVGLMVSYL 480
            G  +R A + G +EV   +LS S++ +AVF P++ M G+ G +F +    VT+ +M S L
Sbjct: 416  GLPMREAALQGAAEVSGTILSMSVSLVAVFIPILLMGGVIGRLFNEFGMVVTLAIMASAL 475

Query: 481  TGIMLLPVLYLLVYRTGVRTRK---WKWLSFKFNNPIKDHTLDRFYDAGVDWVFRHKTFS 537
              + + P+L   +  +G  +R     +W    F   +      R Y   V W   H+   
Sbjct: 476  VSLTVTPMLASRL--SGHSSRPPAIIRWFDAGFERTL------RLYGKAVGWCLSHRRIV 527

Query: 538  VLFCVISIPLCVFFFFFIDKERMPDIEENELIARIEWNENIHVDENKRRVDELFKELKDE 597
            +   + S+   V+ F  +     P     E I R+  +     D +   + +L  ++ D+
Sbjct: 528  LASFLASVAASVYLFETLPSSFFP----QEDIGRLSVSTQAREDISYTAMRDLQAQVADQ 583

Query: 598  VLEQTASIGRQDFILNRER----------ELSSSEAELYFRTETSNAIASLEQAVYRKLK 647
            + +  A +     +    R          EL   E     R   S  +  L QA  +   
Sbjct: 584  IRKNPAVVHVTSIVGGNSRNPLNNGSMFVELKPKEE----RAPISQVLTELGQATSKVAG 639

Query: 648  ER---YPLSVISFSPPETVFE-KLFVTGEPDVVAEFYTRNKAEAPKAEAIRSVEQELGRK 703
             R    P   + F    +  + +L V G         T N+      EA+R         
Sbjct: 640  IRTYINPQQSLRFGGRSSASQYQLVVQG-----LNADTTNEWSNKLMEAMRRDHTFTAVT 694

Query: 704  TGINPTGIAFENQLNLSISKEKLLLYRVSYNELYRVLKTAFRENSVTMLHSYQQYLPINI 763
            T      IA      +S+  EK   + ++ ++L + L+ +F   +   + S      + +
Sbjct: 695  TDAQNGAIA----ATISVDPEKAAAFGITNDQLRKTLEMSFGGYTAAQIQSTGDSYDVIV 750

Query: 764  AGD-EKTVNEVLQETLVQTQPDNRGNVDFIPLRELINVAPAEDLKSITSGRNGEYVPF-- 820
              D  K+ N+   + L      +  +   +PL    ++   +    +T  + G+ V    
Sbjct: 751  EFDSSKSWND---DFLSDINILSAKSGVLVPLSNFASLTRTQ--APVTINQTGQLVSTTI 805

Query: 821  -----DFYGVQDANRLMREVKQVAEETGDWDTGFSGSIFSNKEMLDELVVILLISLLLMY 875
                 D   + DA   + ++K       D  T + G+    ++      V++L ++L +Y
Sbjct: 806  SFNLPDGVALSDATSRIDQIKTTIGLPQDVFTSYGGTAAIFQQSQGNTGVLILAAVLTIY 865

Query: 876  FILAAQFESFLQPLLVLAEIPIDVAFALLLLWICGHTLNLMSAIGLIVTCGIVINDSILK 935
             +L   +ESF+ PL +L+ +P     AL+ L + G   ++++ IGL++  GIV  ++I+ 
Sbjct: 866  VVLGVLYESFIHPLTILSGLPAAAFGALVALKVMGMDFSIIALIGLLMLIGIVKKNAIMM 925

Query: 936  LD-AINELRKAGVPLLEAIHEAGRRRLRPIIMTSLTTIFAMVPLLFSSDMGSELQKPLSI 994
            +D A+  +R+   P   AIHEA  RR RPI+MT+   +   +P+   S   SEL++PL I
Sbjct: 926  IDVAVELMREKAEPPAIAIHEACVRRFRPIMMTTFCALLGALPIALGSGASSELRQPLGI 985

Query: 995  AMIGTMSIGTAVSLFIIPLLY 1015
            A++G + +   ++LFI P+++
Sbjct: 986  AVVGGLIVSQLLTLFITPVIF 1006



 Score = 39.3 bits (90), Expect = 1e-06
 Identities = 31/140 (22%), Positives = 67/140 (47%), Gaps = 9/140 (6%)

Query: 363  PLVIGLSMVVSIVISFVFFYLCNMSLNIISLAGLILALGMMIDSSIIVTE-NISQYRERG 421
            PL I   +  +   + V   +  M  +II+L GL++ +G++  ++I++ +  +   RE+ 
Sbjct: 878  PLTILSGLPAAAFGALVALKVMGMDFSIIALIGLLMLIGIVKKNAIMMIDVAVELMREKA 937

Query: 422  ----YSLRRACVTGTSEVVTPMLSSSLTTIAVFAPLIFMSGIAGAIFFDQAFSVTVGLMV 477
                 ++  ACV        P++ ++   +    P+   SG +  +      +V  GL+V
Sbjct: 938  EPPAIAIHEACVRR----FRPIMMTTFCALLGALPIALGSGASSELRQPLGIAVVGGLIV 993

Query: 478  SYLTGIMLLPVLYLLVYRTG 497
            S L  + + PV+++ + R G
Sbjct: 994  SQLLTLFITPVIFVEMDRFG 1013