Pairwise Alignments

Query, 619 a.a., putative Na+/sulphate transporter (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 422 a.a., Putative membrane protein from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  124 bits (310), Expect = 1e-32
 Identities = 71/216 (32%), Positives = 128/216 (59%), Gaps = 10/216 (4%)

Query: 2   LITIIILVLSAIFFVNGKIRSDLVALCALVALLIFQILTPDEALSGFSNSVVIMMIGLFV 61
           +IT+++LV++ I FV+ ++   LVA    +AL    ++   +  +   N+ VI+++ + V
Sbjct: 5   IITLLVLVVAIIIFVSDRLPMGLVAFMVPMALYFTGVIDAKDIFASIVNANVILIVAMCV 64

Query: 62  VGGAIFQTGLAKMISSRILKLAGNSEIRLFFLVMLVTSAIGAFVSNTGTVALMLPIVVSL 121
           +G A F+TGLA   S  +LK A  +E  L  L+ L+   + AFVSN+GTVA+++PIV+ +
Sbjct: 65  LGAAFFKTGLAWQSSKILLKYA-KTERSLSVLIFLIGGVMSAFVSNSGTVAVLIPIVLGI 123

Query: 122 AMSAKMNPSRLLMPLAFASSMGGMMTLIGTPPNLVIQNTLT--SAGFEPLSFFTFLPVGL 179
           A S+++ P +LLMPL F +++G  +++IG+P NL+ +NT+   S G   + FF +  +G 
Sbjct: 124 AASSQIKPIKLLMPLVFGATIGADISIIGSPGNLIAKNTIETFSKGSLSVPFFEYAKIG- 182

Query: 180 VSVAVGTLVLMPLSKWFLSKK--GQKDDNSRSGKSL 213
               +  L+   +  +F   K    +D N++S   +
Sbjct: 183 ----IPLLIACSIFLYFFGSKLIADRDGNTQSDSQM 214



 Score =  109 bits (273), Expect = 2e-28
 Identities = 59/194 (30%), Positives = 105/194 (54%), Gaps = 4/194 (2%)

Query: 429 AIMVLMVAMMVF-DFIPVAPVTAVMI--AGILMVLTGCFRNVEAAYKTINWESIVLIAAM 485
           A+ +L +A MV  D+I   P   ++   A I++V  G     E  + +    ++ ++A M
Sbjct: 229 AVFILSIAGMVATDYIKFLPPMHIIACCAAIVLVFAGVLTQKET-FNSFETLTVFMLAFM 287

Query: 486 LPMSLALEKTGASEYISNTLVSGLGSYGPIALMAGIYFTTSLMTMFISNTATAVLLAPIA 545
           +P+  AL  TGA E I+N ++S  G  G + +MA ++  T  +T  +SNTA   LL P+ 
Sbjct: 288 MPLGAALNSTGAGEMIANAVISVTGDSGVMIIMASLWILTWALTQVMSNTAACTLLCPVG 347

Query: 546 LQSAMQIGVSPVPFLFAVTVGASMCFASPFSTPPNALVMPAGQYTFMDYIKVGLPLQIIM 605
              A  IG  P   + AV + +S+   +P +   N++++  G   F D++K GL + ++ 
Sbjct: 348 WTIAQSIGADPRAVVIAVFIASSVAVCTPMAITANSMIIGPGNVKFKDFLKPGLAISLVC 407

Query: 606 GIVMILVLPLIFPF 619
            IV +++LP+ +PF
Sbjct: 408 FIVSMILLPIFYPF 421



 Score = 64.7 bits (156), Expect = 8e-15
 Identities = 48/200 (24%), Positives = 95/200 (47%), Gaps = 21/200 (10%)

Query: 3   ITIIILVLSAIFFVNGKIRSD---------LVALCALVALLIFQILTPDEALSGFSNSVV 53
           +T+ + +LS    + G + +D         ++A CA + L+   +LT  E  + F    V
Sbjct: 226 LTLAVFILS----IAGMVATDYIKFLPPMHIIACCAAIVLVFAGVLTQKETFNSFETLTV 281

Query: 54  IMMIGLFVVGGAIFQTGLAKMISSRILKLAGNSEIRLFFL-VMLVTSAIGAFVSNTGTVA 112
            M+  +  +G A+  TG  +MI++ ++ + G+S + +    + ++T A+   +SNT    
Sbjct: 282 FMLAFMMPLGAALNSTGAGEMIANAVISVTGDSGVMIIMASLWILTWALTQVMSNTAACT 341

Query: 113 LMLPIVVSLAMSAKMNPSRLLMPLAFASSMGGMMTLIGTPPNLVIQNTLTSAGFEPLSFF 172
           L+ P+  ++A S   +P  +++ +  ASS+      + TP  +   + +   G   + F 
Sbjct: 342 LLCPVGWTIAQSIGADPRAVVIAVFIASSVA-----VCTPMAITANSMIIGPG--NVKFK 394

Query: 173 TFLPVGLVSVAVGTLVLMPL 192
            FL  GL    V  +V M L
Sbjct: 395 DFLKPGLAISLVCFIVSMIL 414



 Score = 60.8 bits (146), Expect = 1e-13
 Identities = 50/200 (25%), Positives = 93/200 (46%), Gaps = 22/200 (11%)

Query: 424 APVAAAIMVLMVAMMVF--DFIPVAPVTAVMIAGILMVLTGCFRNVEAAYKTINWESIVL 481
           +P    ++VL+VA+++F  D +P+  V    +  + +  TG     +     +N  +++L
Sbjct: 2   SPAIITLLVLVVAIIIFVSDRLPMGLVA--FMVPMALYFTGVIDAKDIFASIVN-ANVIL 58

Query: 482 IAAMLPMSLALEKTGASEYISNTLVSGLGSYGPIALMAGIYFTTSLMTMFISNTATAVLL 541
           I AM  +  A  KTG +   S  L+    +   ++++  I+    +M+ F+SN+ T  +L
Sbjct: 59  IVAMCVLGAAFFKTGLAWQSSKILLKYAKTERSLSVL--IFLIGGVMSAFVSNSGTVAVL 116

Query: 542 APIALQSAMQIGVSPV----PFLFAVTVGASMCFASPFSTPPNALVMPAGQ--------Y 589
            PI L  A    + P+    P +F  T+GA +   S   +P N +     +         
Sbjct: 117 IPIVLGIAASSQIKPIKLLMPLVFGATIGADI---SIIGSPGNLIAKNTIETFSKGSLSV 173

Query: 590 TFMDYIKVGLPLQIIMGIVM 609
            F +Y K+G+PL I   I +
Sbjct: 174 PFFEYAKIGIPLLIACSIFL 193