Pairwise Alignments

Query, 914 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 1053 a.a., TonB-dependent receptor for chondroitin sulfate and hyaluronic acid (susC-like) (from data) from Bacteroides thetaiotaomicron VPI-5482

 Score =  343 bits (881), Expect = 3e-98
 Identities = 277/987 (28%), Positives = 452/987 (45%), Gaps = 134/987 (13%)

Query: 32   IDSLITVGYATGSLKTISGSVEKITETQMNKDQITNPLEAIRGRVPGLTIQRGTNGPAAL 91
            +D ++ VGY     + ++GSV K     +    + +  +A+ GR+ G+ +  G   P   
Sbjct: 97   LDEVVVVGYQEVRRRDLTGSVAKANMADVLTAPVASFDQALGGRIAGVNVTSGEGMPGGN 156

Query: 92   DAVRLRGTTSLTSGNDPLIIVDGV-FGDLSMLTSIYPTDIESFTILKDASETAQYGSRGA 150
             ++ +RG  SLT  N PL ++DG    D S  +++ P+DIES   LKDAS TA YG+RGA
Sbjct: 157  MSIVIRGNNSLTQENSPLFVIDGFPIEDSSAASTLNPSDIESLDFLKDASATAIYGARGA 216

Query: 151  SGVIEITTKKGMSGKTQVSYNGIFGISTVYKNLKMLSADDFRRVASERGISI-------- 202
            +GV+ ITTKKG  G+ Q+SY+G FG+  V + + M+ A +F ++ +E   ++        
Sbjct: 217  NGVVIITTKKGKVGRAQLSYDGSFGVQHVTRTIPMMDAYEFVKLQNEMYPTVVAGSYLMN 276

Query: 203  -------LDKGNNT---DFQKEIEQTGLQQNHHIAFYGGSNESSYRVSLGFMDRQGVILN 252
                   LD   N    ++Q EI +T  QQNH +   GG+    Y  SL + D+ G ++ 
Sbjct: 277  YEGKQWTLDDYKNIPQYNWQDEIFKTAWQQNHTVRLAGGTEGVRYNASLSYFDQDGTLIE 336

Query: 253  EDMKNFTSNMNMTQRMFDGFLNCELG-------MFGSIQKNHNLVDLQKTFYSAATF--- 302
               K     MN   R   G LN  L          GS   + +   +   FYS   +   
Sbjct: 337  TGYKRMQGRMNTVVRR--GKLNMSLTTNYSRSIQTGSTPSSTSYSGMNNLFYSVWGYRPV 394

Query: 303  -NPTYPNHKDPDSGSWDGITTASQIT-NPLAWMEVQDHDA-TSHISTHARLTFNLMDELK 359
             +P  P     DS + + + +++    NP+   + +   + T+++  +    + ++  LK
Sbjct: 395  TSPDTPLSFLMDSSTDNAVDSSNDYRFNPIKSQKNEYRKSYTNNLQMNGFAEYEVLKGLK 454

Query: 360  LVLFGAYTYNIIENSQYLPTSVWAHG-------QAYKGTKKMESLLGNMMLTYKKG-WKK 411
            L +   YTY+  +  Q+  ++    G        A    ++  + L    LTY+    KK
Sbjct: 455  LKVSAGYTYDSRKQDQFNNSNTRYGGPTSTDKVNAQVTRQERLTWLNENTLTYQTNIKKK 514

Query: 412  HYFDALALAELQKETYTGFYTTVTNFNTDKFGYHNLQAGALRPWEGTNSYYEQPHLASFM 471
            H+ + L     Q   Y  +    T+   +  G   +  G         S +    + S++
Sbjct: 515  HFLNVLGGITFQNSDYEIYSFRTTHIPNESLGMAGMSEGQAGTTTSAKSSWA---MLSYL 571

Query: 472  GRFNYTYADRYSLTMTARTDASSKFGANHKWGFFPSVSAAWVISEEKFMKRL-PVIDNLK 530
            GR  Y Y  +Y  T++ R D SSKF  ++++G+FPS S AW  SEE+FMK L  V+ + K
Sbjct: 572  GRVTYNYMSKYYATVSFRADGSSKFNKDNRYGYFPSGSLAWSFSEEEFMKPLKSVLSSGK 631

Query: 531  FRIGYGLAGN---------------QSGIDSYTTLSLVKPNGVIPVGNSAA-VSLGDLRN 574
             R+ +GL GN               +S + SYT+ + + P+GV P  N A    +     
Sbjct: 632  VRLSWGLTGNNRIGEYDYYALLAVLKSRVGSYTSTNSL-PSGVYPFDNDATNAGVVPTSL 690

Query: 575  TNPDLKWEVKHTFNTGIDLAMFGNRLLLSANYYNSKTTDMLYLYNVSVP-PFTYNTLLAN 633
             N DLKWE    +N G+DL  F  R+ ++ + Y   T D+  L + S+P    Y +   N
Sbjct: 691  PNKDLKWETTEQWNAGLDLGFFDERIGITMDIYRKTTRDL--LLDASLPFSSGYYSATKN 748

Query: 634  IGSMRNSGLEIAIGITPLKTQDMELNINANITFQQNKLLSLSGMYNGELISAPEYKSLAS 693
            IG +RN GLE+++     +T+  +   N NI+F +NK+L+LS      L++A ++     
Sbjct: 749  IGKVRNDGLELSLNTVNFQTRAFKWTTNFNISFNKNKVLALSENQTA-LLTAAQFDQ--- 804

Query: 694  LDGAGFHGGYNHIVYQVVGQPLGVFYLPRANGLVSDGNGGYTYD---------------- 737
                 ++G  ++I    VG P+G+ Y     G V +G   Y YD                
Sbjct: 805  ----NYNGQSSYIA--KVGLPMGLMY-----GYVYEGT--YKYDDFNKSGNSYSLKPGVP 851

Query: 738  --------------IADLNGGGVSLEDGEDRYVAGQAVPKTILGSNLSFRYKRFDISVQI 783
                           ADLNG GV   D  DR + G+ +P    G   +F YK  D+S+  
Sbjct: 852  HYSTETNTQPGMPKYADLNGDGV--VDSNDRTIIGRGLPIHTGGFTNNFEYKGIDLSIFF 909

Query: 784  NGAFGHKIYNGTSLTY-------MNMNIFPDY-------NVMQEAPA--RNIKDQTATDY 827
              ++G+ I N   L +         +N F  Y       N   + PA   +  ++  +  
Sbjct: 910  QWSYGNDIMNANRLFFESSNNRSRELNQFASYANRWTPENPTSDIPAATNSSSNRVISSR 969

Query: 828  WLENGAYVNFDYVTLGWNVPIEKVQKLKKYVRSLRLAFTVNNLATISGYSGLSPMINSST 887
             +E+G+Y+    VT+G+  P + V+K K  +   R+     NL T +GYSG  P ++   
Sbjct: 970  IIEDGSYLRLKNVTVGYTFPAKLVKKWK--IDKARVYVAAQNLWTCTGYSGYDPEVSVRN 1027

Query: 888  VNSTLGLDDKRGYPLARTYTLGLSINF 914
               T GL D   YP A + + G+S+ F
Sbjct: 1028 SALTPGL-DYSSYPRAYSISFGVSLGF 1053