Pairwise Alignments

Query, 401 a.a., capsular polysaccharide biosynthesis protein Cps4K (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 309 a.a., NAD dependent epimerase/dehydratase family protein from Bacteroides ovatus ATCC 8483

 Score = 50.8 bits (120), Expect = 5e-11
 Identities = 59/241 (24%), Positives = 88/241 (36%), Gaps = 42/241 (17%)

Query: 3   ILVTGAKGFVGRNLCAQLNNIKNGKARCYGDLKIEEVFEYDIDSTSEQLD---------- 52
           ILV+G  GF+G +LC +L N        +  + ++  F    D+    +D          
Sbjct: 4   ILVSGGAGFIGSHLCTRLIN------EGHDVICLDNFFTGSKDNIIHLMDNHHFEVVRHD 57

Query: 53  ---AWCQKADFVFNLAGVNRP-----------KENVEFMKGNFGFASTLLDTLKKHHNTC 98
               +  + D ++NLA    P           K +V       G A  L D      +T 
Sbjct: 58  VTYPYSAEVDEIYNLACPASPIHYQHDPIQTAKTSVMGAINMLGLAMRL-DAKILQASTS 116

Query: 99  PVMLSSSAQASLTGRFGN-------SEYGRSKKAGEDLFLQYGKDTGAKVLVYRFPNLYG 151
            V             +GN       S Y   K+  E LF+ Y +    +V + R  N YG
Sbjct: 117 EVYGDPIVHPQPESYWGNVNPVGYRSCYDEGKRCAETLFMDYHRQNNVRVKIIRIFNTYG 176

Query: 152 KWCRPNYNSAVATFCNNIANDLPIQV-SDSSVVLELLYIDDLVDEMIHALKGEEHHCEFE 210
               PN    V+ F     N+  I +  D        YIDDL++ MI  +  E+   EF 
Sbjct: 177 PRMLPNDGRVVSNFILQALNNEDITIYGDGKQTRSFQYIDDLIEGMIRMMNTED---EFT 233

Query: 211 G 211
           G
Sbjct: 234 G 234