Pairwise Alignments

Query, 1049 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 1132 a.a., TonB-linked outer membrane protein, SusC/RagA family from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  418 bits (1075), Expect = e-120
 Identities = 301/1038 (28%), Positives = 491/1038 (47%), Gaps = 60/1038 (5%)

Query: 37   KVLKGRIVNAEGEPIAGAVVNV-AEASRIALSDKDGFFTLKNVKPADELYVSSVGYLPAT 95
            K + G + + EGEP+ GA V +  + +R  ++D DG +++ +V     L  S +G+    
Sbjct: 126  KEITGVVTDEEGEPLPGASVLIEGQPNRGTVTDIDGTYSI-DVVEGTTLIFSYIGFESYK 184

Query: 96   AIADFDENFKIVMDADLDEYAHTTPLPFNRKPKKFVTESTSIVTGEELEKHPVTVLQNAF 155
                      +V+  + +       + F  + K  +T + S V  ++++ +P + L NA 
Sbjct: 185  VEVGTQSKIDVVLLVNAESLEEVVVVGFGEQKKISLTGAVSTVNVDDMKSNPTSSLSNAL 244

Query: 156  TSTVTGVETYEAQSEPGWSETAMYIRGIRTMNASARSPLIIVDNVERDLSFLDAYPIESI 215
               V GV       +PG + +  +IRGI T      +PL++VDN+ERDL+ L+   I+SI
Sbjct: 245  AGNVPGVMGMMQSGQPGKNISEFWIRGISTFGGGT-NPLVLVDNIERDLNELNIEDIQSI 303

Query: 216  TILKDAAATAIYGMRGANGAVLVTTKRGETGKTKINFTQEVGFQTIAGIPESQNSYNYAL 275
            T+LKDAA TA+YG RGANG +L+TTKRG  GK  +NF  E  + T    PE ++   YA 
Sbjct: 304  TVLKDAAETAMYGSRGANGVILITTKRGSAGKIDVNFKDEFIYNTRTITPEFEDGVTYAS 363

Query: 276  SRNQARYLDGLSPEYSDEDLKYYRRVCNGEQLEGMAKYKYFNTNWHDTMLRDAAPQYRTN 335
              N++R      P Y  E+L+  R         G+    Y N +W + +LRD A  YR N
Sbjct: 364  LLNESRITRNEGPIYQPEELEILRL--------GLDPDLYPNVDWKNLLLRDGAMTYRAN 415

Query: 336  LSVSGGNARARYYVSFSYLRQEGLFDTKWTEWNEGYSTQEVLNRYNLRSNIDIDVNKFLN 395
            L++SGG   +RYY S SY+ + G+++       + Y+T     R+N R N D ++ +   
Sbjct: 416  LNMSGGGPTSRYYASGSYINEGGMYEID-QSLKDDYNTNANYKRWNYRLNADFNLTETTE 474

Query: 396  VSMDLGGRIDNISQPGIDVWNLFTWGA--GENLPVYPVFCPNGEFFMPTSSDSKNGAAQI 453
            V + + G +   + PG+   ++  WGA  G +    PV   NG      + +  N     
Sbjct: 475  VKIGVAGSLSKRNSPGLG--DVDFWGALFGYSPIRTPVLYSNGYVPAVGTGNQTNPWVMA 532

Query: 454  AGRGVEQNRRRNLYTTVTATGNLDALVPGLKAKMTFSFDSYETFQKVQQADVNVYYYNYM 513
               G  +N    + T +T   +L  +  GL+ +    +D   T    ++     +     
Sbjct: 533  TQTGFNENWVNKVQTNITVEQDLGFVTEGLRVRGIVGYDILNTNNIQRRKWPEQWQAARA 592

Query: 514  ADVNDPSEYTYQRMRTYKALPNATTSPRDYYYNL--NMNGGLAYEHTFGKHAVNAQAFIR 571
             DVN    +T+    +     + ++  R  +Y+L  N N  +   H  G       A+++
Sbjct: 593  RDVNGDLVFTHISNPSEMQQSSTSSGNRLEFYDLMINYNRDIGDHHVGGATRFTRDAYVQ 652

Query: 572  TYQ---NVVRGQESSNRYLSYNAQATYVYNNRYILSGNISRMGSDNYADGERFGTFPGGS 628
            T     ++  G    N+ ++   + TY +  RY ++ N    GS+N+A GE++G FP  S
Sbjct: 653  TVNLGGDIKNGIARKNQAIA--GRLTYNWLYRYFVNFNFGYTGSENFAPGEQYGFFPAVS 710

Query: 629  VGWVLSEESWLKNS--FVNLLKLRASYGRAG-QAVTGVSRYPYQGTFTE--------GGG 677
              W +++E+++KN+  ++NL K+R SYG+AG   + G  R+PY  T +E         GG
Sbjct: 711  FAWNIADENFVKNNIGWLNLFKVRYSYGKAGNDQLMGGERFPYLYTISEITNDDGEPVGG 770

Query: 678  YNFGT--SQSYTEGVYESTAGNKNIKWEISDMANFGVDFDLWNKKIYGSVDFFKEWRSNI 735
            Y +    S  Y  G+  S   +  + WE++   N G  FD+    I  ++DFF E R+ I
Sbjct: 771  YQWADYGSDRYFGGMMYSQVASPYVTWEVATKQNLG--FDIETNHITANIDFFDEERTGI 828

Query: 736  LVSRSTVPGLFGV-NAPQDSYGKAETKGFEITLGHSNRIGDFEYYIDGMLTFNTNKITEM 794
             + R  +P + G+ + P+ + G  +++G +    +  ++G         +T++ N+I E 
Sbjct: 829  YMPREYLPAMVGLESTPRANVGIVKSRGLDGRFKYIQQVGQVTLTARSNITYSKNEIVEK 888

Query: 795  DELTPDYAYQARTGNRIDQSQLLIWKQWASNPDLIPESYEDAVANPQKYPWNAAGKYKLG 854
            DE    Y YQ   G R+ QS+ L+          + E Y+D     +  P    G Y+ G
Sbjct: 889  DEENNVYPYQNEEGFRVGQSRGLVALG-------LFEDYDDI----RNSPTQTFGVYQPG 937

Query: 855  NAVFQDTNGDRKIDSYDKVPTGYTNIPELIPTIRLGFSWKGFDARAVLTAYLNRTVPCRE 914
            +  ++D NGD  I+  D+V  G T  P LI  I    +WKGF+           T     
Sbjct: 938  DIKYKDVNGDGVINDGDRVAIGATRRPNLIYGIGASANWKGFNIGVHFQGAGKSTFSTYG 997

Query: 915  NMDYGFG---WGGTSTHEITNTWGYYTDDPTDP--RNINAKYPRLSTSFSDLDRNYPYNE 969
               + F    WG      + +      D   DP   N NA YPRL  S+     N  + E
Sbjct: 998  KTVHAFSEGEWGQVMKGVMGDDRWISADISEDPSTENPNASYPRL--SYGPNPNN--FRE 1053

Query: 970  STIWVVNGDFLSLRNVEVGYSLPARLISKVNMTKCRLYFSGYNLCNWSHLPKGFDPENPT 1029
            ST W+ +G +L L+ V++GYSLP ++   V     RLY  G NL  WS   K +DPE  T
Sbjct: 1054 STFWLRDGRYLRLKTVDIGYSLPKKISRLVRADNIRLYVVGTNLFTWSKF-KLWDPELAT 1112

Query: 1030 NYIWAYPKTRSFTFGVNI 1047
                 YP  +S T G+++
Sbjct: 1113 PRGEDYPPAKSITLGISV 1130