Pairwise Alignments

Query, 601 a.a., hypothetical protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 627 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  167 bits (423), Expect = 1e-45
 Identities = 176/662 (26%), Positives = 278/662 (41%), Gaps = 109/662 (16%)

Query: 2   KRISTYIVTLVLALAGSSCSDYLDKEYDAS---LSEKKVFNNQNLTREFLANIYTNLPD- 57
           K++   ++ +   L      +YLD   + +    S  ++F+N   T+ + ANI+T +PD 
Sbjct: 5   KKLYRKVLIVAFTLCNLCSCNYLDVSDELAGNLQSLDEIFDNVAYTKRWYANIFTAIPDY 64

Query: 58  -GLAPLSDDQFTGASRDC--MTDNAVTCWGLH-YYTKIGSDGYTAGDHPLLGFWNTDLYG 113
            G+   ++   TG       M D     +G +  Y K   +    G H     W      
Sbjct: 65  SGIVA-AEGNVTGFKNPWAGMCDELTVGYGDNKLYNKTEKNAANMGFHR----WGNCYKQ 119

Query: 114 IRKCNMFLKNAKASVVGNTEKDGDDNRLYDRYCAEARLLRAIFHFDLICWFGAAPVIAED 173
           IR+ N+FL NAK      T  D           A  R +RA +H+ L   +G  P++ + 
Sbjct: 120 IRQANIFLANAKPIAANGTHVDVLTEEELIEMKANVRFMRAYYHYLLFEQYGPIPLVKD- 178

Query: 174 ESGEPIIFDLSDPSAMNMFRTPAAEALEWVADQCDQIKNQLPFR--YSDEASNWGRVNGA 231
                 I++  D   +++ R+P  E + ++  +  ++ N+L     + D+  N     G 
Sbjct: 179 -----AIYERDDD--LDIPRSPIDEIIAYIDQELKEVSNELSQEALHEDDQHNAWPTKGV 231

Query: 232 AAYALKARALLYRASKL-----------NNPDGNTAY-------WANAAQAAADFITQNN 273
           A  A++A+  +Y ASKL            NPDG   +       W  A  A  DF+T   
Sbjct: 232 AL-AVRAKLWVYAASKLFNGEYKEALSITNPDGQRLFPDKDPGKWEKAVSALKDFMTFAE 290

Query: 274 KQSYPYRLYNTGNPENDYYECFTTNPVYNNEII--LARSVWNTNQVEKVFLPVGFTGSFS 331
            ++    L N  NP    Y+ F T   YN EII   A + W     +            +
Sbjct: 291 DENNYELLENEENPSQALYDLFQT---YNREIIWATAANTWGGMDGDAFDRRCTPRSEQN 347

Query: 332 GNGRTNPTQNLVDAYEMSNGKRIDENG-------------STY----------------D 362
           G G T  TQ LVDA+ M++G  + E                TY                +
Sbjct: 348 GMGCTGVTQELVDAFYMNDGYPVQETSFLKQSTLYTTEGTDTYKEKVVTSNNKKVSDAKN 407

Query: 363 AANPYKDRDPRLAQTIFYQGMMWGRADKEERRAIDVRYNSDADKGVDYTSAMGGTYTGYY 422
            +N + +R+PR   T+F+Q   W  ++         +++  +   +  T     T TGY 
Sbjct: 408 VSNRFMNREPRFYNTVFFQNRRWHVSNNV------TQFHKGSPNELSGTIY---TLTGYM 458

Query: 423 L-KKFVNNISCKEPATYP--HAWMIFRYGEILLNAAEAYNEAE-GPAKAYSYINEVRARA 478
           L K+F   ++ K P         +IFR  +  L  AEA NE +   A+  +Y+N+VR RA
Sbjct: 459 LYKRFNREVNKKSPGVTSKFRPSIIFRLADFYLLYAEAVNEIDPNDARVLTYLNKVRHRA 518

Query: 479 GMPAYADMS------QSELRERIRNERRIELAFEDHRFFDVRRWKLYDNVTSTGETGKPR 532
           G+     ++      Q   R  I+ ERRIELA E  R+FDVRRW + D      + G+ R
Sbjct: 519 GLENIEILNPDIAGKQDLQRLAIQRERRIELATEGQRYFDVRRWMIAD------QEGEGR 572

Query: 533 YNQLLNLYGVKVTGNADTPSYTFGLAETVNSRTFVNPKSYYFPIPANEVKRAP-NLGQNP 591
             Q   ++G+ + G  D       L E   S      K Y +PIP +E+K++   L QNP
Sbjct: 573 --QYGYVHGMNMNGTEDK-----FLQEVEASPIVFRRKMYLYPIPDSEMKKSDGQLVQNP 625

Query: 592 GW 593
           GW
Sbjct: 626 GW 627