Pairwise Alignments

Query, 601 a.a., hypothetical protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 640 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  147 bits (371), Expect = 1e-39
 Identities = 180/692 (26%), Positives = 281/692 (40%), Gaps = 151/692 (21%)

Query: 1   MKRISTYIVTLVLA-LAGSSCSDYLDKEYDASLSEKKVFNNQNLTREFLANIYTNLPD-- 57
           MK+I   I  ++ A L  +SCSDYLD   + +   +  F+N+   R+FL   Y+ LP   
Sbjct: 1   MKKIIVSISFILTAILCNTSCSDYLDIVPEGTPDMETAFSNKTNARKFLFTCYSYLPKWD 60

Query: 58  ---GLAPLSDDQF------TGASRDCMTDNAVTCWGLHYYTKIGSDGYTAGDHPLLGFWN 108
               +  L+ D+       TG     ++ NA   W      +IG     + D P   +W+
Sbjct: 61  QAGSIGFLAGDEHWLIPKGTGFIDQRLSLNA---W------EIGRGEQNSND-PYQNYWD 110

Query: 109 -----TDLY-GIRKCNMFLKNAKASVVGNTEKDGDDNRLYDR--YCAEARLLRAIFHFDL 160
                T+L+  IR CN+FL+N    +         D + Y+R  + AE + L+A +H+ L
Sbjct: 111 GLNGGTNLWTAIRDCNIFLENIDKPL---------DLQQYERNRWIAEVKFLKAYYHYYL 161

Query: 161 ICWFGAAPVIAEDESGEPIIFDLSDPSAMNMFRTPAAEALEWVADQCDQIKNQLPFRYSD 220
              +G  P++  + S +      +    +  +R P  + + ++++  D     LP + +D
Sbjct: 162 FMLYGPIPIMDNNISID------ASAEEVRRYRDPVDDVVNYISNLLDDAAKDLPLQVTD 215

Query: 221 EASNWGRVNGAAAYALKARALLYRASKLNNPDGNTAY--------------------WAN 260
                GR+    A A+KA+  L  AS L N  GNT Y                    W  
Sbjct: 216 AGEELGRITQPIAKAVKAQLWLLAASPLFN--GNTDYINVKDNQGRSLFPSETDNNKWKQ 273

Query: 261 AAQAAADFITQNNKQSYPYRLYNTGNPEN----------DYYECFTTNPVYNNEIILARS 310
           AA AA D I    +  +   LY    P N          D  E  T    +N EII   S
Sbjct: 274 AADAALDAIKCAKEAGHD--LYYFTLPVNGLSDATRKLLDIGEAVTEK--WNTEIIWG-S 328

Query: 311 VWNTNQVEKVFLPVGFTGS-FSGNGRTNPTQNLVDAYEMSNGKRIDENGSTY-------- 361
            WN N ++KV +     GS +       PT  + + +  SNG  I E+   +        
Sbjct: 329 TWNVNGLQKVAVAKTTKGSHYDAISVMAPTLTVAEQFYSSNGVPISEDKGDFWSKNYPNR 388

Query: 362 --------------------DAANPYKDRDPRLAQTIFYQGMMW---GRADKEERRAIDV 398
                               + A  + +R+PR    + +    W   G A  E +     
Sbjct: 389 YDFTIIPDEGNNKHYLKIGEETAYLHLNREPRFYANLSFDRGTWYGYGYASDEPKDLAFY 448

Query: 399 RYNSDADKGVDYTSAMGGTYTGYYLKK---FVNNISCKEPATYPHAWMIFRYGEILLNAA 455
           ++ +    G    ++   +YTGY  KK   +  +++    +T  +A+ I R  ++ L  A
Sbjct: 449 KFRAKEVSG--RITSEDYSYTGYLNKKVCSYKTSVTDNGLSTERYAFPIIRLADLYLMYA 506

Query: 456 EAYNEAEGPAK--AYSYINEVRARAGMPAYADMSQ------------SELRERIRNERRI 501
           EA NE         Y+YI+ VR RAG+    +  Q            + +RE IR ER  
Sbjct: 507 EALNETLNTPNNDVYTYIDLVRERAGLDGVKESWQKYSKYPEKPNTKTGMREIIRMERLN 566

Query: 502 ELAFEDHRFFDVRRWKLYDNVTSTGETGKPRYNQLLNLYGVKVTGNADTPSYTFGLAETV 561
           ELA E  RF+D+RRWK             PR      + G  V G     +  F    T+
Sbjct: 567 ELACEGKRFWDLRRWK----------KELPR-----EVKGWYVQGET---AQEFYRVTTL 608

Query: 562 NSRTFVNPKSYYFPIPANEVKRAPNLGQNPGW 593
             R+  + K Y +P+    V + PNLGQNPGW
Sbjct: 609 YLRSRYSFKDYLWPLKVETVLKDPNLGQNPGW 640