Pairwise Alignments

Query, 601 a.a., hypothetical protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 671 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  166 bits (420), Expect = 3e-45
 Identities = 187/709 (26%), Positives = 293/709 (41%), Gaps = 154/709 (21%)

Query: 1   MKRISTYIVTLVLALAGSSCSDYLDKEYDASLSEKKVFNNQNLTREFLANIYTNLPDGLA 60
           MK+I+ YI T++L L   SCSDYLD   D   +   VFNN+N    +LAN Y  +PD   
Sbjct: 1   MKKITKYIPTIILTLL-CSCSDYLDIVPDNVTTLDIVFNNRNTAERYLANCYHFVPDH-G 58

Query: 61  PLSDDQFTGASRDCMTDNAVTCWGLHYYTKIG---SDGYTAGDHPLLGFWNTD------- 110
            +      GA  +C      T    H+  ++    + G    D P   +W+ +       
Sbjct: 59  SVKRIPGMGAGHECWF---YTTNDSHFDNEVSFYIARGLQNIDAPYANYWDGEGGSNLPM 115

Query: 111 LYGIRKCNMFLKNAKASVVGNTEKDGDDNRLYDRYCAEARLLRAIFHFDLICWFGAAPVI 170
              IR+CN+FL   +     N   D +  R    + AE  +L+A +HF L   +G  P++
Sbjct: 116 FRAIRECNIFLDYVRDQHKVNDLTDSERKR----WIAEVNVLKAYYHFFLFEHYGPIPIV 171

Query: 171 AEDESGEPIIFDLSDPSAMNMFRTPAAEALEWVADQCDQIKNQLPFRYSDEASNWGRVNG 230
              +   P+    +DP  + + R P  + ++++    D     LP   + EA+  GR+  
Sbjct: 172 ---DKALPVS---TDPEGVKVTRMPVDQIVDYMVKLIDDSYKDLPPVITMEATEMGRLTQ 225

Query: 231 AAAYALKARALLYRASKLNNPDGNTAY--------------------WANAAQAAADFIT 270
            AA ALKA+ LL+ AS L N  GN  Y                    W   A+A  + I 
Sbjct: 226 PAALALKAKILLWAASPLFN--GNKDYANFRNEEGKPFINQEFSREKWVRTAEACKEAIE 283

Query: 271 Q---NNKQSYPYRL---YNTGNPENDYYEC---FTTNPVYNNEIILARSVWNTNQVEKVF 321
               N  Q Y   +   Y+   PE  +Y      T    +N+E+I +     TN+++ + 
Sbjct: 284 SAETNGCQLYDCSMDMSYSQDLPEEIFYSMNIRQTVTERFNSELIWSVGKQGTNELQNLS 343

Query: 322 LP--VGFTGSFSGNGRTN-------------PTQNLVDAYEMSNGKRIDEN-----GSTY 361
           +   V      SGNG+               PT    + +   NG  IDE+        Y
Sbjct: 344 MACIVPSLQQGSGNGQVTGSILQSRAAGVYAPTLETAEQFYSKNGVPIDEDKEWLTSGKY 403

Query: 362 D---------AANPYK------------DRDPRLAQTIFYQGMMW---GRADKEERRAID 397
           D         +A+ Y             +R+PR   ++ + G  W   GR D  +   +D
Sbjct: 404 DNRYTTRQVTSADKYNMRTGWTTAVLHFNREPRFYGSLGFDGSTWYGNGRTDVNDLNYVD 463

Query: 398 VRY--NSDADKGVDYTSAMGGTYTGYYLKKFV---NNISCKEPATYPHAWMIFRYGEILL 452
            +Y  NS    G +Y      + TGY+ KK V   N I+      Y + + I R G++ L
Sbjct: 464 GKYGRNSGNKWGFNY------SITGYFAKKVVYYQNAITQSSQVVYEYPFPIIRLGDLYL 517

Query: 453 NAAEAYNEA-EG----PAKAYSYINEVRARAGM------------------PAYAD---- 485
             AE+ NEA EG    P + Y+Y+ +VR R+G+                    Y++    
Sbjct: 518 MYAESLNEATEGDNNVPEEVYTYLRKVRERSGLKKGVLGQTEDIGDVRVAWEKYSNDPTK 577

Query: 486 -MSQSELRERIRNERRIELAFEDHRFFDVRRWKLYDNVTSTGETGKPRYNQLLNLYGVKV 544
             ++  +R  I+ ER+IELA E H++ D+RRWK      ++ E  K       ++ G  V
Sbjct: 578 PKTKDGMRSIIKQERKIELALEGHQYNDLRRWK-----DASKELSK-------SIKGWNV 625

Query: 545 TGNADTPSYTFGLAETVNSRTFVNPKSYYFPIPANEVKRAPNLGQNPGW 593
            G  +   Y   +      R F   K Y +PI   +++    L Q  GW
Sbjct: 626 QGEIEEDFYK--VTTLFVPRAFTT-KDYLWPIKKQDLQVDDKLIQTYGW 671