Pairwise Alignments

Query, 601 a.a., hypothetical protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 646 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  163 bits (413), Expect = 2e-44
 Identities = 176/664 (26%), Positives = 272/664 (40%), Gaps = 110/664 (16%)

Query: 6   TYIVTLVLALAGSSCSDYLDKEYDASLSEKKVFNNQNLTREFLANIYTNLPDGLAPLSDD 65
           TY + L+   A +    YLD   D   +    F N+N   ++L   Y+ +P   +P ++ 
Sbjct: 17  TYFLLLIGGTALTQSCSYLDVVPDKIGTIDNSFTNRNEAEKYLNTCYSYIPGNDSPYNNV 76

Query: 66  QFTGASRDCMTDNAVTCWGLHYYTKIGSDGYTAG----DHPLLGFWNTDLYGIRKCNMFL 121
              GA      D   + + L  Y   G      G    + PL   W     GIR CN+FL
Sbjct: 77  ALMGA------DELWSYYPLTPYNDFGPWKIALGRQNVNDPLCNMWYVYYRGIRDCNIFL 130

Query: 122 KNAKASVVGNTEKDGD-DNRLYDRYCAEARLLRAIFHFDLICWFGAAPVIAEDESGEPII 180
           +N     V +  K GD    +  R+ AE + L+A +HF L   +G  P++  D++  PI 
Sbjct: 131 EN-----VSDMSKVGDLTPSMRKRWLAEVKFLKAYYHFCLFRMYG--PIVIADDN-LPIS 182

Query: 181 FDLSDPSAMNMFRTPAAEALEWVADQCDQIKNQLPFRYSDEASNWGRVNGAAAYALKARA 240
              + P  +   R P  + ++++ D  D+    LP   S++ S  GRV   A   LKAR 
Sbjct: 183 ---ATPEEVRKKREPVDKVVQYIVDLLDECLEDLPRVISNKGSELGRVTQIANLTLKARL 239

Query: 241 LLYRASKLNNPDGNTAY--------------------W--ANAAQAAADFITQNNKQSYP 278
           L+  AS L N  GN  Y                    W  A AA  AA   +Q+ +    
Sbjct: 240 LVTAASPLFN--GNKDYANYVDKDGEHLFNSTEDPTKWDTAIAACEAAIEASQDPELGLE 297

Query: 279 YRLYNTGNPENDYYECFTT--NPV---YNNEIILARSVWNTNQVEKVFLP-VGF--TGSF 330
              Y +    +D  +C  +  N V   +N E+I   S  +   ++ + +  VG      +
Sbjct: 298 LYSYKSNLILSDETKCQLSIRNSVTEKWNTELIWGLSSRSDAHLQSLCMTRVGAYPNNMW 357

Query: 331 SGNGRTNPTQNLVDAYEMSNGKRIDE----------------NGSTYDAANPYK------ 368
            G    NPT    + Y   NG  +DE                N   Y+ A+ Y+      
Sbjct: 358 GGQEMLNPTMEATNLYYTKNGVPMDEDKTWNYADRFKVKMHTNEQPYELASYYETIQMNF 417

Query: 369 DRDPRLAQTIFYQGMMWGRADKEERRAIDV-RYNSDADKGVDYTSAMGGTYTGYYLKKFV 427
           DR+PR    I + G  W + +       D+    + A +          T TGY+ KK V
Sbjct: 418 DREPRFYANIGFDGCTWYQYNCPSDSEKDIWTAKNRAGQAQGKLGTNSYTTTGYWTKKLV 477

Query: 428 N---NISCKEPATYPHAWMIFRYGEILLNAAEAYNEAEGPAK---AYSYINEVRARAGMP 481
           +    ++     T    W   R  ++ L  AEA NE +       A SY++++RARAG+ 
Sbjct: 478 SVTYEVTQSGYTTERFPWPEMRLTDLYLLYAEALNEKDDVNNRELAISYLDQIRARAGLK 537

Query: 482 AYADM------------SQSELRERIRNERRIELAFEDHRFFDVRRWKLYDNVTSTGETG 529
              +             +Q  LRE I+ ER IEL FE  RF+D+RRWK  + V +     
Sbjct: 538 GIKESWDTYSKYPNRYKTQEGLREIIQRERAIELMFEGSRFWDLRRWKTANKVLNE---- 593

Query: 530 KPRYNQLLNLYGVKVTGNADTPSYTFGLAETVNSRTFVNPKSYYFPIPANEVKRAPNLGQ 589
                    ++G    G      Y+     T+ +  F+ P+ Y++PI  N++   P L Q
Sbjct: 594 --------KIHGWNFEGETPAEYYS---QRTLYTLKFIAPRDYFWPIHQNDLVVNPKLVQ 642

Query: 590 NPGW 593
           NPGW
Sbjct: 643 NPGW 646