Pairwise Alignments

Query, 457 a.a., outer membrane protein oprM precursor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 513 a.a., efflux transporter outer membrane subunit from Paraburkholderia sabiae LMG 24235

 Score =  200 bits (508), Expect = 1e-55
 Identities = 141/490 (28%), Positives = 245/490 (50%), Gaps = 46/490 (9%)

Query: 11  LLFAGILTSCKVGKSYVRPDLHLPD-------SLAQHQDTVSFGDQDWEEIYTDSTLRSL 63
           +LF+  L+ C VG ++ RP    P+       + A  +   S  +  W E++ D TL +L
Sbjct: 15  VLFSLALSGCLVGPNFERPAQSSPNVFDRTQTAQAPSKPVESGFNAHWWELFNDPTLNAL 74

Query: 64  IDRALDHNKDMLIAAARIKEMAAQKRISTAALLPDIKGKVTAERELENHGG--------- 114
             +  D N D+  A+AR+++  A++R++ AA  P + G  +  RE  +  G         
Sbjct: 75  EQQLADANLDVAAASARLRQSRAEQRVAGAAEYPTLTGAASYNRERGSENGILSLLGVTP 134

Query: 115 ----------------DAFKKS------DTFEAQFLVSWELDLWGNLRWARSASIAEYLQ 152
                            A   S      D ++  F  SWE+D+WG +R +  A+ A    
Sbjct: 135 TSQQPQSASGSAPLGVSAMPGSKGSPAYDLYQFGFDASWEVDIWGRVRRSVEAASALTDA 194

Query: 153 SVEAQRALQMTIVAEVAQAYYELVALDTELDIVKQTLKAREEGVRLARIRFEGGLTSETS 212
           S E + A+ ++  AE+A+ Y +L      L I +Q L    +  +L + R   G+T++  
Sbjct: 195 SYEERNAVLLSARAELARDYIQLRDTQALLQIAQQNLDIARDATKLTKTRVREGVTTDLD 254

Query: 213 YRQAQVELARTATLVPDLERKISLKENDIAFLAGEYPNRIARSRLLQEFN---FPETLPI 269
              A  + A   +L+P LE +     N I  L  + P  + R  L+   +    PE +PI
Sbjct: 255 VANASAQEATIESLIPTLESRRETTINAIGVLLAKEPGAL-RQMLVDPRDVPHLPEQVPI 313

Query: 270 GMPSTLLERRPDIRQAEQKLIAANAKVGVAYTNMFPRLALTGGFGSESTSLSELL--KSP 327
           G PS L +RRPDIR+AE +L AA A +G+A  + +PR++L G  G +S  LS L    S 
Sbjct: 314 GFPSELAQRRPDIRKAEAQLHAATAAIGMAKADFYPRISLNGSAGFQSLQLSNLADWASG 373

Query: 328 YAVMEGALLTPIFGWGKNRAALKGKKAAYEAEIHSYEKTVLTAFKETRNAIVNFNKIKEV 387
             V+  ++  PIF  G+ +  L+ ++A  +     Y++TVL A++E  +A++ ++  ++ 
Sbjct: 374 QFVVGPSITLPIFEGGRLKGTLQLREAQQQEAAIVYKRTVLQAWREVDDALIVYDAEQQR 433

Query: 388 Y-ALRANLERSAKSYMDLAQLQYINGVINYLDVLDAQRGYFDAQIGLSNAIRDELITVVQ 446
           +  L A ++ + ++ + +A+ +Y  G +++LDVL+ Q+   DAQ  L  +  D    ++ 
Sbjct: 434 HNRLEAVVDLNLRA-LSIARQRYKAGAVDFLDVLNVQKQLLDAQSNLEQSRADAAANLIT 492

Query: 447 LYKALGGGWK 456
           L K LGGGW+
Sbjct: 493 LCKVLGGGWE 502