Pairwise Alignments

Query, 457 a.a., outer membrane protein oprM precursor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 503 a.a., efflux transporter outer membrane subunit from Paraburkholderia sabiae LMG 24235

 Score =  218 bits (555), Expect = 4e-61
 Identities = 148/476 (31%), Positives = 229/476 (48%), Gaps = 25/476 (5%)

Query: 3   LNKLYIAILLFAGILTSCKVGKSYVRPDLHLPDSL----------AQHQDTVSFGDQ--- 49
           +N+  +  L  A   + C +  +Y RP   +  +           A+   T +  DQ   
Sbjct: 1   MNRTILTALAAALFASGCTLAPTYERPAAPVAATYPKGGVYDNQPAKGTATRTANDQAAT 60

Query: 50  --DWEEIYTDSTLRSLIDRALDHNKDMLIAAARIKEMAAQKRISTAALLPDIKGKVTAER 107
              W E + D  L+ LI+ AL +N+D+ ++A ++ E  AQ R+  A L+P +    T  R
Sbjct: 61  DIGWREFFVDPRLQRLIELALQNNRDLRVSALKVDEARAQYRVQRADLMPSLSVDGTGTR 120

Query: 108 ELE----NHGGDAFKKSDTFEAQFLVSWELDLWGNLRWARSASIAEYLQSVEAQRALQMT 163
                  ++ G A   SD ++     SWELD +G +R     ++  Y  + +A++A ++ 
Sbjct: 121 TRTPKDLSYSGRATVGSD-YQVAASASWELDFFGKVRSLTQQALQTYFSTAQARKAEEIL 179

Query: 164 IVAEVAQAYYELVALDTELDIVKQTLKAREEGVRLARIRFEGGLTSETSYRQAQVELART 223
           +V++VA  Y  LVA D  L   K T         L +++++ G  SE   R+A   + + 
Sbjct: 180 LVSQVADQYLTLVAYDEMLQSTKNTYDTARRSYELTKLQYDTGTGSELDLREAAGTMQQA 239

Query: 224 ATLVPDLERKISLKENDIAFLAGE-YPNRIARSRLLQEFNFPETLPIGMPSTLLERRPDI 282
                  +R  +  EN +  L G   P  + +   L        +P G+PS LL RRPDI
Sbjct: 240 QANYESQQRSRAQAENALVLLVGAPLPADLPQGLPLASQQLLADIPAGLPSDLLTRRPDI 299

Query: 283 RQAEQKLIAANAKVGVAYTNMFPRLALTGGFGSESTSLSELLKSPYAVME--GALLTPIF 340
            +AE  LI ANA +G A    FP ++LTG FG+ S SL  L K           +  PIF
Sbjct: 300 MEAEATLIGANANIGAARAAFFPSISLTGDFGTASASLGTLFKPGQLAWSFGPTISVPIF 359

Query: 341 GWGKNRAALKGKKAAYEAEIHSYEKTVLTAFKETRNAIVNFNKI-KEVYALRANLERSAK 399
             G+NRA L   K      +  YEK + TAF+E  + +       +++ AL+ N+E   +
Sbjct: 360 KGGENRANLDLAKLETNVAVAQYEKAIQTAFREVADGLAARGTYDRQIKALQENVESQQR 419

Query: 400 SYMDLAQLQYINGVINYLDVLDAQRGYFDAQIGLSNAIRDELITVVQLYKALGGGW 455
            Y DL+ L+Y NGV +YL+VL AQ   + AQ  L  A  + L  +V LY+ LGGGW
Sbjct: 420 RY-DLSDLRYRNGVDSYLNVLTAQNDLYSAQQSLITASLNRLTNLVDLYQYLGGGW 474