Pairwise Alignments

Query, 457 a.a., outer membrane protein oprM precursor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 490 a.a., efflux transporter outer membrane subunit from Paraburkholderia sabiae LMG 24235

 Score =  271 bits (692), Expect = 5e-77
 Identities = 156/464 (33%), Positives = 261/464 (56%), Gaps = 12/464 (2%)

Query: 1   MKLNKLYIAIL-LFAGILTSCKVGKSYVRPDLHLPDSLAQHQDTVS-FGDQDWEEIYTDS 58
           M+L   ++ +  +FA  L+ C +G +Y RP + +P +     +  S   + +W + + D 
Sbjct: 1   MRLATSFVCVFGVFA--LSGCLLGPNYSRPQVEVPATYRFPDNYASDVANTEWWKQFDDP 58

Query: 59  TLRSLIDRALDHNKDMLIAAARIKEMAAQKRISTAALLPDIKGKVTAERELENHGGDAFK 118
            L  LI  AL +N D+ +AAAR+ +   Q   + AALLP +     AER+  +     F 
Sbjct: 59  VLNDLITTALANNNDVKVAAARVDQFLGQFVTTRAALLPHVDAGFDAERQRISTTSPLFS 118

Query: 119 KS-----DTFEAQFLVSWELDLWGNLRWARSASIAEYLQSVEAQRALQMTIVAEVAQAYY 173
                  ++++     SWE+DL+G+ R    A+ A  L + EA+R   +T+V+ VA +Y 
Sbjct: 119 NITSPVFNSYQLALSASWEIDLFGHNRRLTEAARASLLSTEEAKRGTILTLVSSVASSYI 178

Query: 174 ELVALDTELDIVKQTLKAREEGVRLARIRFEGGLTSETSYRQAQVELARTATLVPDLERK 233
            L +LD +L+I K T  +R E V +  +RF+GG  S+    Q+Q E   + + +P +E +
Sbjct: 179 NLRSLDRQLEIAKATTSSRAESVHVFELRFKGGEVSQMELAQSQSEYEDSRSRIPQIESQ 238

Query: 234 ISLKENDIAFLAGEYPNRIARSRLLQEFNFPETLPIGMPSTLLERRPDIRQAEQKLIAAN 293
           I+ +E+ ++ L G  P  I R R L E   P  +P G+PS LLERRPD+RQAEQ L++AN
Sbjct: 239 IAQQEDALSVLLGRNPGDILRGRALGELAAP-AVPAGLPSDLLERRPDLRQAEQDLVSAN 297

Query: 294 AKVGVAYTNMFPRLALTGGFGSESTSLSELLKSPYAV--MEGALLTPIFGWGKNRAALKG 351
           A++G A    FP++++TG  G++S   S+L   P  V    G++  PIF  G     +K 
Sbjct: 298 AQIGAAKALYFPQISITGLLGTQSGQFSKLFTGPARVWSFAGSVTQPIFEGGAIAGQVKQ 357

Query: 352 KKAAYEAEIHSYEKTVLTAFKETRNAIVNFNKIKEVYALRANLERSAKSYMDLAQLQYIN 411
            +A  +  ++SY K +  AF+E  +A+++  K++E + ++     +  +Y  +A+L+Y  
Sbjct: 358 AEAVQQQALYSYRKAIQVAFQEVDDALISSQKLREQFDIQGRQVEALATYAHMARLRYEG 417

Query: 412 GVINYLDVLDAQRGYFDAQIGLSNAIRDELITVVQLYKALGGGW 455
           G  +Y++VLDA+R  F+AQ+  +      L++ V LYKA+GGGW
Sbjct: 418 GYTSYIEVLDAERSLFNAQLSQTQTQAGVLVSYVSLYKAMGGGW 461