Pairwise Alignments

Query, 457 a.a., outer membrane protein oprM precursor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 505 a.a., efflux transporter outer membrane subunit from Paraburkholderia sabiae LMG 24235

 Score =  232 bits (591), Expect = 2e-65
 Identities = 153/478 (32%), Positives = 244/478 (51%), Gaps = 31/478 (6%)

Query: 2   KLNKLYIAILLFAGILTSCKVGKSYVRPDLHL---------------PDSLAQHQDTVSF 46
           K + + +A+ LFA   T C +   Y RP   +               P + A+  +  S 
Sbjct: 3   KYSLMAVAVALFA---TGCTMEPKYERPAAPVSGAFPSDGVYATQPAPGAGARTANGQSA 59

Query: 47  GDQDWEEIYTDSTLRSLIDRALDHNKDMLIAAARIKEMAAQKRISTAALLPDI-----KG 101
            D  W + + D  L+ LID AL +N+D+ ++   I+   AQ +I+ AAL+P +     + 
Sbjct: 60  VDIGWRDFFVDQRLQQLIDIALKNNRDLRVSVLNIEASRAQYQIARAALMPTLDAVASQS 119

Query: 102 KVTAERELENHGGDAFKKSDTFEAQFLVSWELDLWGNLRWARSASIAEYLQSVEAQRALQ 161
           K    ++L   G      S+ +      SWE+D +G +R  +  ++A+YL + +A++A +
Sbjct: 120 KQRTPKDLSFFGNTI---SNQYSVGLNASWEIDFFGRIRSLKDQALAQYLSTAQARKATE 176

Query: 162 MTIVAEVAQAYYELVALDTELDIVKQTLKAREEGVRLARIRFEGGLTSETSYRQAQVELA 221
           + +VA VA  Y  ++A D  L + + TLK  +E  R+ +++++ G  SE   RQA+  + 
Sbjct: 177 IALVASVADQYLTVLAYDDLLKVTQDTLKTAQESYRITKLQYDTGTGSELDLRQAETVVE 236

Query: 222 RTATLVPDLERKISLKENDIAFLAGE-YPNRIARSRLLQEFNFPETLPIGMPSTLLERRP 280
           +         R  +  EN +  L GE  P+ +    +L +      +P G+PS LL RRP
Sbjct: 237 QANADQQSQARLRAQAENALIVLVGEPLPSDLPGGLVLNDQALLTDIPAGLPSDLLTRRP 296

Query: 281 DIRQAEQKLIAANAKVGVAYTNMFPRLALTGGFGSESTSLSELLKSPYAVMEGA--LLTP 338
           DI +AEQ L+AANA +G A    FPR++LTG FG+ S +L  L K   A    A  +  P
Sbjct: 297 DIMEAEQNLLAANANIGAARAAFFPRVSLTGSFGTLSPTLGGLFKPGSAAWSFAPQITLP 356

Query: 339 IFGWGKNRAALKGKKAAYEAEIHSYEKTVLTAFKETRNAIVNFNKI-KEVYALRANLERS 397
           IF  G+N+A L         ++  YEK + TAF+E  + +       +++ AL  N    
Sbjct: 357 IFEGGQNKANLDLATVQKNIQVAQYEKAIQTAFREVADGLAARGTYDQQIKALERNTFAE 416

Query: 398 AKSYMDLAQLQYINGVINYLDVLDAQRGYFDAQIGLSNAIRDELITVVQLYKALGGGW 455
            +  +DL+ L+Y NGV +YL VL AQ   + +Q  L  A  + L  +V LYKALGGGW
Sbjct: 417 QRR-LDLSDLRYRNGVDSYLAVLTAQTDLYTSQRSLITARMERLTNLVDLYKALGGGW 473