Pairwise Alignments

Query, 1038 a.a., cation efflux system (AcrB/AcrD/AcrF family) (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 1022 a.a., RND efflux system, inner membrane transporter from Pseudomonas sp. S08-1

 Score =  380 bits (975), Expect = e-109
 Identities = 261/1035 (25%), Positives = 505/1035 (48%), Gaps = 55/1035 (5%)

Query: 9    VGNPVTICMVVFALLLLGKVSYDQLSVDLLPDLNNPRLFIELKAGERPPEEIEKQFVKNM 68
            +  PV   ++   ++LLG ++Y +L+V   P+++ P + + +      PE +E Q  + +
Sbjct: 8    IRRPVFATVLSLIIVLLGLLAYQRLAVREYPNIDVPIVTVNVIYPGASPEIMESQVAQPI 67

Query: 69   ESMAIRQSDVTQVSSVIKAGTARITVEYTWTKDMDEAFLDLQKAMNPFAQ--NKDITELK 126
            E +      +  VSS+ ++   +IT ++    + DEA  D++  +         +I E  
Sbjct: 68   EDVLSGIEGLDFVSSISRSENTQITAQFRLGSNSDEAANDVRDRLGRVRSLLPDEIDEPM 127

Query: 127  ITQHDANLSPVVLVGMSHQSITDMAELRKIAESYIRNELIRLEGVAEVTLSGEEVSTLTI 186
            + + +A+  PVV +    +  + M E+  + E  +++ L  + GV+EV + G     + I
Sbjct: 128  VQKVEADAQPVVWLAFYSERFSAM-EITDVLERVVQDRLQIIPGVSEVQIRGARSYAMRI 186

Query: 187  QTDPYKLDAFQLKIEDIASRIESNNQSISGGRVSELGLQYLVKSSSLFASEDDFENLIVG 246
              DP KL A  L ++D+   +   N  I  GR+  +  ++ V S +   + D+F  LI+ 
Sbjct: 187  WLDPEKLAAHDLTVQDVEDALRRQNVEIPAGRIESVQREFSVLSETDLKTPDEFNRLILD 246

Query: 247  YKAIQQEEASGNNASGTATANSNKAPVFLKEVATVQFLNARPENIVRINGKRSIGLSIYK 306
                                +S    + L +V   +   A    +VR  G+ ++ + + K
Sbjct: 247  --------------------DSRGYLLRLSDVGHAEIGAADERTVVRFKGRPAVAVGMVK 286

Query: 307  EMRFNTVKVVDEVTRQLAVIENALP-GYHFQVISNQGTFIKSAIGEVKSSAVLGVILAIV 365
            +   N +++ D + + L  +   LP G    V ++   FI+ +I  V ++    V+L ++
Sbjct: 287  QATANPLEISDGLNQALPELRELLPEGMEMAVANDNSLFIRESIKNVYATIWEAVVLVVL 346

Query: 366  VLFVFLRRMGTTLIVSLAIPISIVATFNLMFFNGLSLNIMTLGGLALGAGMLVDNAIVVI 425
            ++F+FLR +  TLI  + IP+S++    LM   G ++N +TL  + L  G++VD+AIVV+
Sbjct: 347  IIFLFLRSLRATLIPLVTIPVSLIGACALMALMGFTVNTLTLLAMVLAIGLVVDDAIVVL 406

Query: 426  ESIFRNQEKGLSIKEAAINGTAEVANAVIASTLTTIVVFLPIVYLHGASGELFKDQAWTV 485
            E+I R+ E+G+S   AA  G+ E+A AVIA TLT   V+ PI ++ G SG+LF + AWT+
Sbjct: 407  ENIHRHIEQGMSPMRAAFVGSREIAFAVIAMTLTLAAVYAPIGFMQGTSGKLFTEFAWTL 466

Query: 486  TFSLVSSLFVAILVIPMLYIQLSGKKVKLEEVKSIRI------------TGYSRVLRKLI 533
              +++ S FVA+ + PM+   L   K  + + K  R+              Y  +L +++
Sbjct: 467  AGAVLVSGFVALTLSPMMCGHL--LKAHVPQQKHSRLYNLIEGFLNGLTYNYRHLLERVL 524

Query: 534  QRRWLVIGMAVLLLIVTGLLTPFIGTEFMPRAESKTFTAVIKMPEGTQMERTSAAVGNLE 593
            +  WLV+ + + +LI+   L   + +E  P  ++ T    I  P+G  +  TS     LE
Sbjct: 525  RAWWLVVALLLGILILCAWLFGSLRSELAPTEDTGTIVGSINGPDGATVGYTSRYAKQLE 584

Query: 594  ELLYAIVGGDSLCTVYSHIGEGSGSENAIFEGENTAMMKVILSPECTLSPEKVIASFVES 653
                +I   +    +        G           + MK+    +   S  ++    +  
Sbjct: 585  AAYASIPEANRYMVIVGFPTVAQG----------LSFMKLEDWDKRERSQFEIRDELLPK 634

Query: 654  AKNPDGLELTIQQDENSLSSLLGSEGAPIVVEVKGEELDEIAQLTEEVKERMIGVNGIYD 713
             ++  G+      +   L     ++    V+     E  E+ Q  +++   + G  G+  
Sbjct: 635  LQDIPGVR-AFPINRPPLGQSARNQPVNFVIR-SSLEYAELQQYVDQLLAEVRGYPGLES 692

Query: 714  VITSVEDGAPEVVISIDRTIAGINNLSVAMVIEQLKQQLSGKEVGKMEYRGEMRDIVIKV 773
            + T ++   P++ ++++R  A      VA +   ++     ++V + +  GE  D+++++
Sbjct: 693  LDTDLKLNTPQLKVAVNREQAVAVGTDVATIGRSMESLFGSRQVTRFKQNGEQYDVLVQL 752

Query: 774  PDIPLSS---LGALVIKS-GTQEFVLQEIVTITHGQAPKEILRRNQSRIGKVMANMDASK 829
             D+  S+   L  + ++  G     L  ++ +    AP+E+   NQ R   V AN+ +  
Sbjct: 753  QDVDRSNPDDLNRVYVRGRGDNMVQLSNLIEVRETVAPRELNHFNQLRAVTVTANVGSGY 812

Query: 830  SLDKVAAEVRETVKGIELPANYSITVTGEEEKRQESMNSLLFALMLSVVLVYMVMASQFE 889
            +L +    + E  +GI  P +     TG     ++S + +    +L+++ +++V+A+QFE
Sbjct: 813  TLGEALEHLEEKARGI-FPPDTQFDYTGTSRDFKDSSSGVALIFVLALLFIFLVLAAQFE 871

Query: 890  SLLHPFTILLTIPLAVVGAILLFFITGTTINMMGVIGIVMLGGIAVNNSIILVDRINQLS 949
            S   P  ILL++PL++ GA+L   + G T+N+   +G+V L G+   + I++V+  N L 
Sbjct: 872  SFFDPLIILLSVPLSMAGALLALKLFGGTLNIYSQVGLVTLIGLITKHGILIVEFANHLL 931

Query: 950  QAGMELTDAIVEAGQQRIRPIIMTTLTTILAMLPMTFSFGEGASLRSPMAIAVIGGLITS 1009
            + G EL +A++EA  QR+RPI+MTT   +L  LP+  + G GA  R  + + ++GGL+  
Sbjct: 932  REGRELGEAVLEAAVQRLRPILMTTGAMVLGSLPLAIATGAGAESRQQIGMVIVGGLLVG 991

Query: 1010 TLMSLMVIPCVYYVL 1024
            T  +L V+P +Y +L
Sbjct: 992  TFFTLFVVPTLYTLL 1006



 Score = 70.5 bits (171), Expect = 6e-16
 Identities = 50/216 (23%), Positives = 107/216 (49%), Gaps = 8/216 (3%)

Query: 825  MDASKSLDKVAAEVRETVKGIELPANYSITVTGEEEKR-QESMNSLLFALMLSVVLVYMV 883
            ++ S  L++   E+RE      LP    + V  +     +ES+ ++   +  +VVLV ++
Sbjct: 293  LEISDGLNQALPELREL-----LPEGMEMAVANDNSLFIRESIKNVYATIWEAVVLVVLI 347

Query: 884  MASQFESLLHPFTILLTIPLAVVGAILLFFITGTTINMMGVIGIVMLGGIAVNNSIILVD 943
            +     SL      L+TIP++++GA  L  + G T+N + ++ +V+  G+ V+++I++++
Sbjct: 348  IFLFLRSLRATLIPLVTIPVSLIGACALMALMGFTVNTLTLLAMVLAIGLVVDDAIVVLE 407

Query: 944  RINQLSQAGMELTDAIVEAGQQRIRPIIMTTLTTILAMLPMTFSFGEGASLRSPMAIAVI 1003
             I++  + GM    A     ++    +I  TLT      P+ F  G    L +  A  + 
Sbjct: 408  NIHRHIEQGMSPMRAAFVGSREIAFAVIAMTLTLAAVYAPIGFMQGTSGKLFTEFAWTLA 467

Query: 1004 GGLITSTLMSLMVIP--CVYYVLENIKRRINRRTKN 1037
            G ++ S  ++L + P  C + +  ++ ++ + R  N
Sbjct: 468  GAVLVSGFVALTLSPMMCGHLLKAHVPQQKHSRLYN 503



 Score = 58.9 bits (141), Expect = 2e-12
 Identities = 40/170 (23%), Positives = 78/170 (45%), Gaps = 7/170 (4%)

Query: 354  SSAVLGVILAIVVLFVFL------RRMGTTLIVSLAIPISIVATFNLMFFNGLSLNIMTL 407
            SS+ + +I  + +LF+FL            LI+ L++P+S+      +   G +LNI + 
Sbjct: 847  SSSGVALIFVLALLFIFLVLAAQFESFFDPLIILLSVPLSMAGALLALKLFGGTLNIYSQ 906

Query: 408  GGLALGAGMLVDNAIVVIESIFRNQEKGLSIKEAAINGTAEVANAVIASTLTTIVVFLPI 467
             GL    G++  + I+++E       +G  + EA +    +    ++ +T   ++  LP+
Sbjct: 907  VGLVTLIGLITKHGILIVEFANHLLREGRELGEAVLEAAVQRLRPILMTTGAMVLGSLPL 966

Query: 468  VYLHGASGELFKDQAWTVTFSLVSSLFVAILVIPMLYIQL-SGKKVKLEE 516
                GA  E  +     +   L+   F  + V+P LY  L   + ++LEE
Sbjct: 967  AIATGAGAESRQQIGMVIVGGLLVGTFFTLFVVPTLYTLLRRWRPIRLEE 1016