Pairwise Alignments

Query, 1038 a.a., cation efflux system (AcrB/AcrD/AcrF family) (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 1065 a.a., efflux RND transporter permease subunit from Paraburkholderia sabiae LMG 24235

 Score =  342 bits (878), Expect = 6e-98
 Identities = 275/1064 (25%), Positives = 489/1064 (45%), Gaps = 76/1064 (7%)

Query: 4    IIKFAVGNPVTICMVVFALLLLGKVSYDQLSVDLLPDLNNPRLFIELKAGERPPEEIEKQ 63
            I+K A+  P T  ++   L ++G ++  +   D+ P++N P + I         E++  +
Sbjct: 3    IVKLALRRPYTFVVLAVLLFIIGPLAILRTPTDIFPNINIPVVSIVWSYNGFSAEDMAHR 62

Query: 64   FVKNME-SMAIRQSDVTQVSSVIKAGTARITVEYTWTKDMDEAFLDLQKAMNPFAQNKDI 122
               N E ++     D+  + S    G A + V +    D++ A    Q A N  +  + +
Sbjct: 63   ITSNYERALTTDVDDIEHIESQSLNGVAVVKVFFHPGADINRAIA--QAASNSASILRVL 120

Query: 123  TE----LKITQHDANLSPVVLVGMSHQSITDMAELRKIAESYIRNELIRLEGVAEVTLSG 178
                    I  ++A+  PV+ +G+S  ++ +   L  +  S+IR +L  ++G A     G
Sbjct: 121  PPGTLPPNIITYNASTVPVLQLGLSSNTLPEQT-LYDLGNSFIRTQLATIQGAAVPLPYG 179

Query: 179  EEVSTLTIQTDPYKLDAFQLKIEDIASRIESNNQSISGGRVSELGLQYLVKSSSLFASED 238
             ++  + ++ DP  L A  L   D+ + + + N  + GG       +Y V+ +   ++  
Sbjct: 180  GKIRQIVVELDPKALQAKGLAPADVVNAVNAQNLILPGGTAKIGSREYNVEMNGSTSTVA 239

Query: 239  DFENLIVGYKAIQQEEASGNNASGTATANSNKAPVFLKEVATVQFLNARPENIVRINGKR 298
               NL +                       N + V++++VA V    A   NIVR +GKR
Sbjct: 240  ALNNLPI--------------------KTVNGSVVYVRDVAHVIDGYAPQTNIVRSDGKR 279

Query: 299  SIGLSIYKEMRFNTVKVVDEVTRQLAVIENALPG-YHFQVISNQGTFIKSAIGEVKSSAV 357
            +  L I K    +T+ ++ +V   L  I   LPG      +S+Q  F+KSA+  V   A+
Sbjct: 280  AALLQIEKTGSASTLTIIQQVKAMLPKIAAGLPGALKITPLSDQSVFVKSAVSGVVREAL 339

Query: 358  LGVILAIVVLFVFLRRMGTTLIVSLAIPISIVATFNLMFFNGLSLNIMTLGGLALGAGML 417
            +   L   ++ +FL     TLI++++IP++++ +   +   G ++NIMTLGGLAL  G+L
Sbjct: 340  IAACLTAAMILLFLGSWRATLIIAVSIPLAVLTSLIALAALGQTINIMTLGGLALAVGIL 399

Query: 418  VDNAIVVIESIFRNQEKGLSIKEAAINGTAEVANAVIASTLTTIVVFLPIVYLHGASGEL 477
            VD+A V IE+I  + EKG ++ +A +NG+ E+A     STL+  +VF+P+  L G +  L
Sbjct: 400  VDDATVAIENITHHLEKGEALHDAILNGSGEIAVPTFVSTLSICIVFVPMFLLSGVARYL 459

Query: 478  FKDQAWTVTFSLVSSLFVAILVIPMLYIQL-----------SGK-------KVKLEEVKS 519
            F   A  V F++ +S F +  +IP L + L            G+       + + E+   
Sbjct: 460  FVPLAEAVVFAMCASYFFSRTLIPTLAMYLMRAPSKNGHNAQGRFAIFAHFQARFEQHFE 519

Query: 520  IRITGYSRVLRKLIQRRWLVIGMAVLLLIVTGLLTPFIGTEFMPRAESKTFTAVIKMPEG 579
                GY  VL++ I  R   I + + L   +  L PF G +F P  ++      ++ P G
Sbjct: 520  ALRHGYHNVLQRAIASRRRFIPVYLALCFASLALIPFAGRDFFPAVDTGEIKLHLRAPTG 579

Query: 580  TQMERTSAAVGNLEELLYAIVGGDSLCTVYSHIGEGSGSENAIFE-----GENTAMMKVI 634
            T++E+T+     +E  + +++       V  +IG      N  ++     G   A + + 
Sbjct: 580  TRIEQTARITDEVEAKIRSVIPKSEQAAVLDNIGVPVSGINLTYDSSDPIGSEDADILIT 639

Query: 635  LSPECTLSPEKVIASFVESAKN------PDGLELTIQQDENSLSSLLGSEGAPIVVEVKG 688
            L+P       K  A +V   +N      P      +  D  S     G   API V++ G
Sbjct: 640  LTPN-----HKPTAQYVAQLRNVLTQAFPSVTFAFLPADIVSQILNFGLP-APIDVQIVG 693

Query: 689  EELDEIAQLTEEVKERMIGVNGIYDVITSVEDGAPEVVISIDRTIAGINNLSVAMVIEQL 748
             +L++   +  ++  +M GV G+ D         P + I++DRT A    L+   V + +
Sbjct: 694  NKLEQNRVVANKLLAQMRGVRGLVDARIQQPGDEPTIDINVDRTKAIQAGLTQKDVAQNM 753

Query: 749  KQQLSGKEVGKMEY-----RGEMRDIVIKVPDIPLSSLGALVIKSGTQEFV----LQEIV 799
               LSG       +      G    +V +VP   + SL  L     T + V      ++ 
Sbjct: 754  LIALSGSSQTTPNFWLDPKNGVSYPLVTEVPQYDIHSLQTLTNIPLTTDKVSVNPQNQLG 813

Query: 800  TITHGQAPKEILRRNQSRIGKVMANMDASKSLDKVAAEVRETVKG--IELPANYSITVTG 857
            T +       +   N   +  + A+    + L  VA++V + V     +LP   SI + G
Sbjct: 814  TTSRATQQAVVSHYNVQPVLDIFASTQ-GRDLGSVASDVTKLVDNARAQLPPGSSIVIRG 872

Query: 858  EEEKRQESMNSLLFALMLSVVLVYMVMASQFESLLHPFTILLTIPLAVVGAILLFFITGT 917
            + +   ES   L   L+ ++ LVY++M   F+S L P  I+  +P ++ G   + F T T
Sbjct: 873  QVQSMNESFAGLGAGLVFAIALVYLLMVVNFQSWLDPLIIISGLPGSLAGIAWMLFATHT 932

Query: 918  TINMMGVIGIVMLGGIAVNNSIILVDRINQLSQAGMELTDAIVEAGQQRIRPIIMTTLTT 977
            T+++  + G ++  GIA  NSI++++   +    GME   A ++AG  R RP++MT L  
Sbjct: 933  TLSVPALTGTILCIGIATANSILVINTARESLANGMEPLAAALDAGFNRFRPVLMTALAM 992

Query: 978  ILAMLPMTFSFGEGASLRSPMAIAVIGGLITSTLMSLMVIPCVY 1021
            ++ MLPM    G+     +P+  AVIGGL   T+ +LM +P V+
Sbjct: 993  LIGMLPMALGLGDCGEQNAPLGRAVIGGLAIGTVSTLMFVPVVF 1036