Pairwise Alignments

Query, 1127 a.a., transcription-repair coupling factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 1149 a.a., transcription-repair coupling factor from Pseudomonas putida KT2440

 Score =  512 bits (1318), Expect = e-149
 Identities = 268/651 (41%), Positives = 404/651 (62%), Gaps = 12/651 (1%)

Query: 398  LCIFTDHQLFDRFHKYNLKSDKARSGKVALSLKELNQFTPGDYVVHTDHGIGRFSGLVRI 457
            L +  +  LF +      + DK         +K L +   G  VVH DHG+GR+ GL  +
Sbjct: 442  LALIAESPLFGQRVMQRRRRDKRGETANDAVIKNLTELREGAPVVHIDHGVGRYLGLATL 501

Query: 458  PNGDTTQEVLKLVFQNEDVVFVSIHSLHKVSKYKGKDGEAPRLNKLGTGAWEKLKDRTKA 517
                   E L L +     ++V + +LH +++Y G D     L++LG+ AW+K K +   
Sbjct: 502  EIDGQAAEFLTLEYAENAKLYVPVANLHLIARYTGSDDALAPLHRLGSEAWQKAKRKAAE 561

Query: 518  KIKDIARDLIKLYSQRRQEKGFSYSPDSFLQRELEASFIYEDTPDQSKATMEVKADMESD 577
            +++D+A +L+ +Y++R   KG++++  S       A F +E+TPDQ  A   V+ADM + 
Sbjct: 562  QVRDVAAELLDIYARRAARKGYAFADPSADYATFSAGFPFEETPDQQAAIEAVRADMLAP 621

Query: 578  RPMDRLVCGDVGFGKTEVAIRAAFKAVADNKQVAVLVPTTVLAYQHFQTFRERLKGLPCR 637
            +PMDRLVCGDVGFGKTEVA+RAAF AV   +QVAVLVPTT+LA QH+ +FR+R    P  
Sbjct: 622  KPMDRLVCGDVGFGKTEVAMRAAFIAVHSGRQVAVLVPTTLLAQQHYNSFRDRFADWPVT 681

Query: 638  VEYLSRARTAAQSKAVLKGLKEGEVSILIGTHRILGKDVQFKDLGLLIIDEEQKFGVSVK 697
            VE +SR ++A +  A    L EG++ ILIGTH++L  DV+FKDLGL IIDEE +FGV  K
Sbjct: 682  VEVMSRFKSAKEVAAAAADLAEGKIDILIGTHKLLQDDVRFKDLGLAIIDEEHRFGVRQK 741

Query: 698  EKLRQLKVNVDTLTMTATPIPRTLQFSLMGARDLSVISTPPPNRYPIQTEVHTFNEEVIT 757
            E+L+ L+  VD LT+TATPIPRTL  ++ G RDLS+I+TPP  R  ++T V   N+  + 
Sbjct: 742  EQLKALRSEVDILTLTATPIPRTLNMAVAGMRDLSIIATPPARRLSVRTFVMEQNKSTVK 801

Query: 758  DAINFEMSRNGQVFFVNNRIANLPELKVMIERHIPDCRVAIGHGQMEPTQLEQIIFDFVN 817
            +A+  E+ R GQV++++N +  + +    +   +P+ R+ IGHGQM   +LEQ++ DF +
Sbjct: 802  EALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEARIGIGHGQMRERELEQVMSDFYH 861

Query: 818  YDYDVLLATTIIESGIDIPNANTIIINQAQNFGLSDLHQMRGRVGRSNKKAFCYLLAPPL 877
              ++VL+A+TIIE+GID+P+ANTI+I +A  FGL+ LHQ+RGRVGRS+ +A+ YLL P  
Sbjct: 862  KRFNVLVASTIIETGIDVPSANTIVIERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPTR 921

Query: 878  SSLTAEGKRRLQAIENFSDLGSGIHIAMQDLDIRGAGNLLGAEQSGFIADLGYETYQKIL 937
              ++A+ ++RL+AI N  DLG+G  +A  DL+IRGAG LLG  QSG I  +G+  Y ++L
Sbjct: 922  QKVSADAEKRLEAIANTQDLGAGFVLATNDLEIRGAGELLGEGQSGQIQAVGFTLYMEML 981

Query: 938  AEAVHELRNDEFAELYADEIKGEGQISGEEFVDECQIESDLELLLPATYVTGSSERMLLY 997
              AV  +R      L  ++  G G           +I   L  L+P  Y+     R++LY
Sbjct: 982  ERAVKAIRKGTQPNL--EQPLGGGP----------EINLRLPALIPEDYLPDVHARLILY 1029

Query: 998  RELDGLTLDKDVDAFRFRLEDRFGPVPPETQELLRIVPLRRLAARLGVEKV 1048
            + +     ++ +   +  + DRFG +P  T+ L+R+  L+  A +LG++KV
Sbjct: 1030 KRIASAADEEGLKDLQVEMIDRFGLLPEPTKNLMRLTSLKLHAEKLGIKKV 1080



 Score = 85.5 bits (210), Expect = 2e-20
 Identities = 46/124 (37%), Positives = 76/124 (61%), Gaps = 1/124 (0%)

Query: 106 RTEVLSRLQKGEEGLCIVTYPDALAEKVVSRKELSDKTLKLNVGEKLDTTFITDVLHSYG 165
           R   L RL +   G+ +V    AL  ++   + L   +L L+VG+ +D   +   L + G
Sbjct: 91  RIASLYRLPELSHGILVVPITTAL-HRLAPTRFLLGSSLVLDVGQTIDVEQMRLRLEASG 149

Query: 166 FEYVDYVYEPGQYAVRGSIIDVFSFASEYPYRIDFFGDEVESIRTFEVESQLSRERKEGV 225
           +  VD VYE G++AVRG++ID+F   S+ PYRID F +E+E++RTF+ E+Q S ++ + V
Sbjct: 150 YRCVDTVYEHGEFAVRGALIDLFPMGSKLPYRIDLFDNEIETLRTFDPETQRSIDKVDSV 209

Query: 226 AIVP 229
            ++P
Sbjct: 210 RLLP 213