Pairwise Alignments

Query, 1127 a.a., transcription-repair coupling factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 1148 a.a., Transcription-repair coupling factor from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  518 bits (1334), Expect = e-150
 Identities = 271/668 (40%), Positives = 419/668 (62%), Gaps = 17/668 (2%)

Query: 383  VVRTIHEGFVDHTLHLCIFTDHQLF-DRFHKYNLKSDKARSGKVALSLKELNQFTPGDYV 441
            ++     GF+D   +L +  +  L  +R  +  L  D  R+      ++ L +   G  V
Sbjct: 426  MIGAAEHGFIDTQRNLALICESDLLGERVARRRL--DSRRTINPDTLIRNLAELHVGQPV 483

Query: 442  VHTDHGIGRFSGLVRIPNGDTTQEVLKLVFQNEDVVFVSIHSLHKVSKYKGKDGEAPRLN 501
            VH +HG+GR++G+  +  G    E L L + N+  ++V + SLH +S+Y G   E+  L+
Sbjct: 484  VHLEHGVGRYAGMTTLEAGGIKGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEESAPLH 543

Query: 502  KLGTGAWEKLKDRTKAKIKDIARDLIKLYSQRRQEKGFSYSPDSFLQRELEASFIYEDTP 561
            KLG  AW + + +   K++D+A +L+ +Y+QR  ++GF++  D    +    SF +E TP
Sbjct: 544  KLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTP 603

Query: 562  DQSKATMEVKADMESDRPMDRLVCGDVGFGKTEVAIRAAFKAVADNKQVAVLVPTTVLAY 621
            DQ++A   V +DM     MDRLVCGDVGFGKTEVA+RAAF AV ++KQVAVLVPTT+LA 
Sbjct: 604  DQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQ 663

Query: 622  QHFQTFRERLKGLPCRVEYLSRARTAAQSKAVLKGLKEGEVSILIGTHRILGKDVQFKDL 681
            QH+  FR+R    P R+E LSR R+A +   +L    EG++ ILIGTH++L  DV+ +DL
Sbjct: 664  QHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKLRDL 723

Query: 682  GLLIIDEEQKFGVSVKEKLRQLKVNVDTLTMTATPIPRTLQFSLMGARDLSVISTPPPNR 741
            GLLI+DEE +FGV  KE+++ ++ +VD LT+TATPIPRTL  ++ G RDLS+I+TPP  R
Sbjct: 724  GLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARR 783

Query: 742  YPIQTEVHTFNEEVITDAINFEMSRNGQVFFVNNRIANLPELKVMIERHIPDCRVAIGHG 801
              ++T V  ++  V+ +AI  E+ R GQV+++ N + N+ +    +   +P+ R+AIGHG
Sbjct: 784  LAVKTFVREYDSLVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHG 843

Query: 802  QMEPTQLEQIIFDFVNYDYDVLLATTIIESGIDIPNANTIIINQAQNFGLSDLHQMRGRV 861
            QM   +LE+++ DF +  ++VL+ TTIIE+GIDIP ANTIII +A +FGL+ LHQ+RGRV
Sbjct: 844  QMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRV 903

Query: 862  GRSNKKAFCYLLAPPLSSLTAEGKRRLQAIENFSDLGSGIHIAMQDLDIRGAGNLLGAEQ 921
            GRS+ +A+ +LL P   ++T + ++RL+AI +  DLG+G  +A  DL+IRGAG LLG EQ
Sbjct: 904  GRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQ 963

Query: 922  SGFIADLGYETYQKILAEAVHELRNDEFAELYADEIKGEGQISGEEFV-DECQIESDLEL 980
            SG +  +G+  Y ++L  AV             D +K   + S E+    + ++E  +  
Sbjct: 964  SGSMETIGFSLYMELLENAV-------------DALKAGREPSLEDLTSQQTEVELRMPS 1010

Query: 981  LLPATYVTGSSERMLLYRELDGLTLDKDVDAFRFRLEDRFGPVPPETQELLRIVPLRRLA 1040
            LLP  ++   + R+  Y+ +     + +++  +  L DRFG +P   + LL I  LR+ A
Sbjct: 1011 LLPDDFIPDVNTRLSFYKRIASAKNENELEEIKVELIDRFGLLPDPARNLLDIARLRQQA 1070

Query: 1041 ARLGVEKV 1048
             +LG+ K+
Sbjct: 1071 QKLGIRKL 1078



 Score = 89.4 bits (220), Expect = 2e-21
 Identities = 54/198 (27%), Positives = 103/198 (52%), Gaps = 6/198 (3%)

Query: 34  GGLCASSASLFSSVLVKQDVCPFVFVLGDLEEAGYFYHDLTQVLGTEKVFFFPSSFRRSI 93
           G L  ++ +   + + ++   P V +  D++ A   + ++ Q   T+++    + +  ++
Sbjct: 20  GELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEIRQF--TDQMVMNLADWE-TL 76

Query: 94  KYGQKDAANEIL--RTEVLSRLQKGEEGLCIVTYPDALAEKVVSRKELSDKTLKLNVGEK 151
            Y       EI+  R   L +L   + G+ IV   + L ++V     L    L +  G++
Sbjct: 77  PYDSFSPHQEIISSRLSTLYQLPSMQRGVLIVPV-NTLMQRVCPHSYLHGHALVMKKGQR 135

Query: 152 LDTTFITDVLHSYGFEYVDYVYEPGQYAVRGSIIDVFSFASEYPYRIDFFGDEVESIRTF 211
           L    +   L S G+ +VD V E G+YA RG+++D+F   SE PYR+DFF DE++S+R F
Sbjct: 136 LSRDALRAQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSEQPYRLDFFDDEIDSLRLF 195

Query: 212 EVESQLSRERKEGVAIVP 229
           + ++Q + E  E + ++P
Sbjct: 196 DADTQRTLEEVEAINLLP 213