Pairwise Alignments

Query, 1127 a.a., transcription-repair coupling factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 1148 a.a., transcription-repair coupling factor from Escherichia coli BL21

 Score =  525 bits (1353), Expect = e-153
 Identities = 273/667 (40%), Positives = 418/667 (62%), Gaps = 15/667 (2%)

Query: 383  VVRTIHEGFVDHTLHLCIFTDHQLFDRFHKYNLKSDKARSGKVALSLKELNQFTPGDYVV 442
            ++     GFVD   +L +  +  L         + D  R+      ++ L +   G  VV
Sbjct: 426  MIGAAEHGFVDKVRNLALICESDLLGE-RVARRRQDSRRTINPDTLIRNLAELHIGQPVV 484

Query: 443  HTDHGIGRFSGLVRIPNGDTTQEVLKLVFQNEDVVFVSIHSLHKVSKYKGKDGEAPRLNK 502
            H +HG+GR++G+  +  G  T E L L + N+  ++V + SLH +S+Y G   E   L+K
Sbjct: 485  HLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHK 544

Query: 503  LGTGAWEKLKDRTKAKIKDIARDLIKLYSQRRQEKGFSYSPDSFLQRELEASFIYEDTPD 562
            LG  AW + + +   K++D+A +L+ +Y+QR  ++GF++  D    +    SF +E TPD
Sbjct: 545  LGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPD 604

Query: 563  QSKATMEVKADMESDRPMDRLVCGDVGFGKTEVAIRAAFKAVADNKQVAVLVPTTVLAYQ 622
            Q++A   V +DM     MDRLVCGDVGFGKTEVA+RAAF AV ++KQVAVLVPTT+LA Q
Sbjct: 605  QAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQ 664

Query: 623  HFQTFRERLKGLPCRVEYLSRARTAAQSKAVLKGLKEGEVSILIGTHRILGKDVQFKDLG 682
            H+  FR+R    P R+E +SR R+A +   +L  + EG++ ILIGTH++L  DV+FKDLG
Sbjct: 665  HYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLG 724

Query: 683  LLIIDEEQKFGVSVKEKLRQLKVNVDTLTMTATPIPRTLQFSLMGARDLSVISTPPPNRY 742
            LLI+DEE +FGV  KE+++ ++ NVD LT+TATPIPRTL  ++ G RDLS+I+TPP  R 
Sbjct: 725  LLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRL 784

Query: 743  PIQTEVHTFNEEVITDAINFEMSRNGQVFFVNNRIANLPELKVMIERHIPDCRVAIGHGQ 802
             ++T V  ++  V+ +AI  E+ R GQV+++ N + N+ +    +   +P+ R+AIGHGQ
Sbjct: 785  AVKTFVREYDSLVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQ 844

Query: 803  MEPTQLEQIIFDFVNYDYDVLLATTIIESGIDIPNANTIIINQAQNFGLSDLHQMRGRVG 862
            M   +LE+++ DF +  ++VL+ TTIIE+GIDIP ANTIII +A +FGL+ LHQ+RGRVG
Sbjct: 845  MRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVG 904

Query: 863  RSNKKAFCYLLAPPLSSLTAEGKRRLQAIENFSDLGSGIHIAMQDLDIRGAGNLLGAEQS 922
            RS+ +A+ +LL P   ++T + ++RL+AI +  DLG+G  +A  DL+IRGAG LLG EQS
Sbjct: 905  RSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQS 964

Query: 923  GFIADLGYETYQKILAEAVHELRNDEFAELYADEIKGEGQISGEEFVD-ECQIESDLELL 981
            G +  +G+  Y ++L  AV             D +K   + S E+    + ++E  +  L
Sbjct: 965  GSMETIGFSLYMELLENAV-------------DALKAGREPSLEDLTSHQTEVELRMPSL 1011

Query: 982  LPATYVTGSSERMLLYRELDGLTLDKDVDAFRFRLEDRFGPVPPETQELLRIVPLRRLAA 1041
            LP  ++   + R+  Y+ +     + +++  +  L DRFG +P   + LL I  LR+ A 
Sbjct: 1012 LPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQ 1071

Query: 1042 RLGVEKV 1048
            +LG+ K+
Sbjct: 1072 KLGIRKL 1078



 Score = 91.7 bits (226), Expect = 3e-22
 Identities = 55/198 (27%), Positives = 105/198 (53%), Gaps = 6/198 (3%)

Query: 34  GGLCASSASLFSSVLVKQDVCPFVFVLGDLEEAGYFYHDLTQVLGTEKVFFFPSSFRRSI 93
           G L  ++ +   + + ++   P V +  D++ A   + +++Q   T+++    + +  ++
Sbjct: 20  GELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQF--TDQMVMNLADWE-TL 76

Query: 94  KYGQKDAANEIL--RTEVLSRLQKGEEGLCIVTYPDALAEKVVSRKELSDKTLKLNVGEK 151
            Y       +I+  R   L +L   + G+ IV   + L ++V     L    L +  G++
Sbjct: 77  PYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPV-NTLMQRVCPHSFLHGHALVMKKGQR 135

Query: 152 LDTTFITDVLHSYGFEYVDYVYEPGQYAVRGSIIDVFSFASEYPYRIDFFGDEVESIRTF 211
           L    +   L S G+ +VD V E G+YA RG+++D+F   SE PYR+DFF DE++S+R F
Sbjct: 136 LSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVF 195

Query: 212 EVESQLSRERKEGVAIVP 229
           +V+SQ + E  E + ++P
Sbjct: 196 DVDSQRTLEEVEAINLLP 213