Pairwise Alignments

Query, 200 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 191 a.a., RNA polymerase sigma-70 factor, Bacteroides expansion family 1 from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  106 bits (264), Expect = 3e-28
 Identities = 59/188 (31%), Positives = 97/188 (51%), Gaps = 1/188 (0%)

Query: 9   DERELVLRLIDGDEDAFCELYAAYKNRLLYFAMKFVKSREFAEDIFQDAFTVVWQSRRFI 68
           D  E+  R+   D+ AF E Y  +  R+ +F + +      AE+I QD F   W SR+ I
Sbjct: 4   DLSEIAFRIKQSDKSAFHEFYQLFHKRIYFFCIHYGLKSSDAEEITQDVFVKFWCSRKNI 63

Query: 69  NPDASFSSYLYTIVRNRILNQIRDMANEDKLKEHILSHAVDSANETNNKILFDDLKDVLS 128
           +P+    +YL+ I +N IL+ +R        K + + + +   N T N + +++L  ++ 
Sbjct: 64  DPEKCIKAYLFMISKNTILDMLRKSIRSKANKTYQM-NLILPVNNTENTLEYNELMGIVE 122

Query: 129 RALEQLTPRQREVFNMSRDLQMSHKEIAEALGVSVNTVQEHISVSLKVIRAYLTKYSGTS 188
           + L  L  R+R+VF MSR   MSHKEIA  L +S  TV+ H++++L+  R         S
Sbjct: 123 KTLTALPERRRQVFEMSRLQGMSHKEIASNLNISTKTVENHLTLALQNFRQVFQDAKIMS 182

Query: 189 ADILLILL 196
             +L   L
Sbjct: 183 TSLLAFFL 190