Pairwise Alignments

Query, 200 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 183 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 87.8 bits (216), Expect = 1e-22
 Identities = 50/154 (32%), Positives = 87/154 (56%), Gaps = 4/154 (2%)

Query: 25  FCELYAAYKNRLLYFAMKFVKSREFAEDIFQDAFTVVWQSRRFINPDASFSSYLYTIVRN 84
           F  ++  Y + + YFA+  +KS E A+DI QD FT +W          + + Y+YT+ ++
Sbjct: 14  FETIFTKYYSVVKYFALMLLKSEEDAKDITQDVFTKLWTKPELWTEVPNPTPYIYTLTKS 73

Query: 85  RILNQIR----DMANEDKLKEHILSHAVDSANETNNKILFDDLKDVLSRALEQLTPRQRE 140
             LN I+    ++A ++K+ E  L   +  + +T N I + + + ++   LE+L  ++R 
Sbjct: 74  TTLNFIKHKKVELAYQEKIIEKSLIDELFQSEDTLNPIYYKEAQLIIKLVLERLPEQRRM 133

Query: 141 VFNMSRDLQMSHKEIAEALGVSVNTVQEHISVSL 174
           +F MSR   MS+ EIAE L +S  TV+ HI ++L
Sbjct: 134 IFEMSRFKHMSNLEIAEKLNISKRTVEHHIYLTL 167