Pairwise Alignments

Query, 462 a.a., transglycosylase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 468 a.a., Lytic transglycosylase family protein from Pseudomonas putida KT2440

 Score =  100 bits (250), Expect = 8e-26
 Identities = 95/394 (24%), Positives = 176/394 (44%), Gaps = 23/394 (5%)

Query: 35  DLPQIKDSGELVVLTLYSSTSYFIYRGQEMGFQYE--------LSEQFAKSLGLKLRIEV 86
           DL QI+ S  L VL   S  S    +G+ +G +Y         L+ + A    ++L++ +
Sbjct: 38  DLAQIRTSKVLRVLVNQSRNSSGEVKGEPVGIEYYRLRALEHFLNARTADDQQIQLKL-I 96

Query: 87  ARNVRELIQKLQSGEGDMIAYNLPITKEWKDSLLYCGEDIITHQVIVQQGNGKHKPLKDV 146
            R   +L+  L  GEGD+ A    +      S +     I+    ++  G    +    V
Sbjct: 97  PRAKEQLLGALARGEGDLAAPG-ELLDPTTVSGVRSSAPILDQVPLMLVGRKGERSFSKV 155

Query: 147 TELIGKDIYVKPGKYYDRLVN-LNNELG----GGIHIHKITGDSVTAEDLITQVAQGKIP 201
            +L G+ + +        L+  +N +L       I +  +   ++  ED++  V  G   
Sbjct: 156 EQLSGRTVALTSASAAGPLIQQVNQQLALRKRPPIKVEWVDS-TLAVEDVLEMVQAGIYH 214

Query: 202 YTVADNDLAKLNKTYYPNLNID--LSISFDQRSSWAVRKDSPELAAAATNWHKENMTSPA 259
            TV +  +A+      P L +D  + +   Q   W V  ++P+L AA  ++ +       
Sbjct: 215 LTVVEQPIARRWARVMPRLRLDSRVRLGAPQAMRWYVGGEAPQLLAAVDHFLQGYRAPDN 274

Query: 260 YTASMKRYFENSKMMPHSPILSLKEGKISHYDDLFKKYAQEIGWDWRMLASLAYTESNFD 319
             A+ +R +     + H+P+ S    +++    + +K+ Q    DW  LA+LA+ ES  +
Sbjct: 275 QDAAFERIYRRQYRV-HNPLASKDRQRLASVRAVLQKHGQAQQIDWLNLAALAFKESTLN 333

Query: 320 TTAVSWAGAKGLMQLMPATARAMGVPAGKEQNPEESIKAAVKYIAATDRSF--NMIPDKQ 377
             A    GA GLMQ+ P+ A+ +GV        + ++ A+ +Y+A   R F  +   +++
Sbjct: 334 PAARGTGGAHGLMQITPSAAQRVGV--SNTATVDGNVLASARYLALIRRKFFASAKINER 391

Query: 378 ERLNFILASYNAGLGHIYDAMALAKKYGKNNLVW 411
           ER+ F+LA+YN G   +    A A++ G N   W
Sbjct: 392 ERMAFVLAAYNLGPERVQAMRAEARRRGLNGNQW 425