Pairwise Alignments

Query, 355 a.a., putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 374 a.a., tRNA 2-thiouridylase from Pseudomonas simiae WCS417

 Score =  221 bits (564), Expect = 2e-62
 Identities = 135/356 (37%), Positives = 199/356 (55%), Gaps = 18/356 (5%)

Query: 7   LSGGVDSSVVVHLLCEQGYKPTLFYIKIGM--DGAEYMDCSAEEDIEMSTAIARKYGLSL 64
           +SGGVDSSV   LL EQGY+    ++K     DG EY  C+A +D+  + A+  K G+ L
Sbjct: 18  MSGGVDSSVSAVLLMEQGYEVEGLFMKNWEEDDGTEY--CTAMDDLADAQAVCDKIGIKL 75

Query: 65  EVVDLHKEYWENVAAYAIDKIKKGLTPNPDVMCNKLIKFGCF-EQQVGKNFDFTATGHYA 123
              +   EYW+NV  + + + K G TPNPD++CN+ IKF  F +  +    D  ATGHY 
Sbjct: 76  HTANFAAEYWDNVFEHFLAEYKAGRTPNPDILCNREIKFKAFLDYAMMLGADLIATGHYV 135

Query: 124 TTIRQDGKTWLGTAKDPVKDQTDFLAQIDYLQVSKLMFPIGGLMKQEVREIASRAGLPSA 183
                DG+T L    DP KDQ+ FL  +   Q++K +FP+G L K EVR IA + GL +A
Sbjct: 136 RRRDIDGRTELLKGLDPNKDQSYFLHAVGGEQIAKTLFPVGELEKPEVRRIAEKHGLATA 195

Query: 184 RRKDSQGICFLGKINYNDFVRRFLGEREGAIIELETGKKVGTHRGYWFHTIGQRKGLGLS 243
           ++KDS GICF+G+  ++DF++++L  + G I   E G+ +G H G  +HTIGQR+GLG+ 
Sbjct: 196 KKKDSTGICFIGERRFSDFLKQYLPAQPGEIKTTE-GEVIGRHHGLMYHTIGQRQGLGIG 254

Query: 244 G------GPWFVIKKDVEENIIYVSHGYGVETQFGSEFRINDFHFITENPWKDAGKEIDI 297
           G       PW+V+ KD+E N + V  G      F      ++ +++  NP  D      +
Sbjct: 255 GLKDAGEEPWYVLIKDLEHNELIVGQGNEHPLLFSGALLASEIYWV--NP-IDLSTPRRL 311

Query: 298 TFKIRHTPEFTKGKLVQEEGGQFRILSSEKLQGIAPGQFGVIYDEEAGICVGSGEI 353
           T K+R+        L +   G +R +  +  + + PGQ  V YD E  IC+G G I
Sbjct: 312 TAKVRYRQSDQPCTLEKTATG-YRAIFDDPQRAVTPGQSVVFYDGE--ICLGGGVI 364