Pairwise Alignments

Query, 355 a.a., putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 380 a.a., tRNA-specific 2-thiouridylase MnmA from Agrobacterium fabrum C58

 Score =  140 bits (352), Expect = 7e-38
 Identities = 110/349 (31%), Positives = 169/349 (48%), Gaps = 22/349 (6%)

Query: 7   LSGGVDSSVVVHLLCEQGYKPTLFYIKIGMDGAEYM---DCSAEEDIEMSTAIARKYGLS 63
           +SGGVDSSVV  +L  +GY      +++   GA       C A +DI+ +  +    G+ 
Sbjct: 1   MSGGVDSSVVAGILKREGYDVLGITLQLYDHGAAVHRAGSCCAGQDIDDARRVCETLGIP 60

Query: 64  LEVVDLHKEYWENVAAYAIDKIKKGLTPNPDVMCNKLIKFG---CFEQQVGKNFDFTATG 120
             V+D    + E V     +    G TP P V CN+ +KF       Q++G   D  ATG
Sbjct: 61  HYVLDYEARFRETVINPFAEAYAMGETPIPCVACNQTVKFADLLATAQELGA--DALATG 118

Query: 121 HYATT-----IRQDGKTWLGTAKDPVKDQTDFLAQIDYLQVSKLMFPIGGLMKQEVREIA 175
           HY  +       Q G+  L    D  +DQ+ FL      Q+  L FP+GGL K E R +A
Sbjct: 119 HYIRSRPNPVSGQPGRRALYRPIDSDRDQSWFLFATTQEQIDYLRFPLGGLSKAETRALA 178

Query: 176 SRAGLPSARRKDSQGICFLGKINYNDFVRRFL--GEREGAIIELETGKKVGTHRGYWFHT 233
              GL  A++ DSQ ICF+ +  Y D + +        G I+ L+ G+ +G H G   +T
Sbjct: 179 EEMGLVVAKKADSQDICFVPQGKYTDIINKLKPNAALAGDIVHLD-GRVLGRHDGIVHYT 237

Query: 234 IGQRKGLGL-SGGPWFVIKKDVEENIIYVSHGYGVETQFGSEFRINDFHFITENPW-KDA 291
           IGQR+G+G+ +G P +V+  D     + V     +ET+      + D +++ +     DA
Sbjct: 238 IGQRRGIGVATGEPLYVVHLDARGRRVIVGPREALETR---RVYLRDMNWLGDGALAADA 294

Query: 292 GKEIDITFKIRHTPEFTKGKLVQEEGGQFRILSSEKLQGIAPGQFGVIY 340
           G+      K+R T   T+  L  +E G +  L + +  G+APGQ  V+Y
Sbjct: 295 GQGFTCFAKVRSTRPPTEAVLHADENGIYVDLMTGE-AGVAPGQACVLY 342