Pairwise Alignments

Query, 635 a.a., NADH:ubiquinone oxidoreductase subunit (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 457 a.a., NADH-ubiquinone oxidoreductase chain F (EC 1.6.5.3) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  327 bits (838), Expect = 7e-94
 Identities = 166/407 (40%), Positives = 241/407 (59%), Gaps = 15/407 (3%)

Query: 168 NIEEYIAREGYFALADCL-------------LNKQPADVIDIIKRSGLRGRGGGGFPTGL 214
           ++++Y+AR GY AL   L             +      VI  +K S LRGRGG GFPTGL
Sbjct: 38  SLKDYVARGGYQALRKVLGQDGSPPAGDPPVVGMTQDQVIATLKESALRGRGGAGFPTGL 97

Query: 215 KWEFASKQVSNVKYVVCNADEGDPGAFMDRSIMEGDPHSIVEAMCICGYSIGSSKGLVYI 274
           KW F  +Q    KY+VCN+DEG+PG   DR I+  +PH ++E M I  Y++G S G  YI
Sbjct: 98  KWSFMPRQFPGQKYLVCNSDEGEPGTCKDRDILLYNPHIVIEGMAIAAYAMGISVGYNYI 157

Query: 275 RAEYPLAINRLKKAIEQAREYGLLGDHILGTDFSFDIEIRYGAGAFVCGEETALIHSMEG 334
             E   A  R + A+E+AR  G LGD I+G+ F+F +   +G GA++CGEETAL+ S+EG
Sbjct: 158 HGEIFEAYERFEAALEEARAAGFLGDGIMGSGFNFQLHAAHGFGAYICGEETALLESLEG 217

Query: 335 KRGEPTLKPPFPAESGYLGKPTNVNNVETLANIPIILTKGAEWFASIGTERSKGTKVFAL 394
           K+G+P  KPPFPA  G  GKPT +NN ET A +P I+  G   + + G   + GTK++++
Sbjct: 218 KKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPWIIRNGGAAYLACGKPNNGGTKIYSV 277

Query: 395 AGKINNVGLIEVPMGTTLREVIYEIGGGIKGGKKFKAVQTGGPSGGCL-TEKHLDTPIDF 453
           +G +   G  EVP+GT   +++ E+ GG++ G+  KAV  GG S   L     ++  +D+
Sbjct: 278 SGDVEMPGNYEVPLGTPFSKLL-ELAGGVRKGRTLKAVIPGGSSAPVLPAHIMMECTMDY 336

Query: 454 DNLLAAGSMMGSGGMIVMDEDDCMVSVARFYLDFTVEESCGKCTPCRIGNKRLLELLNKI 513
           D++  AGSM+GSG +IVMD+  CMV   +    F + ESCG+CTPCR G   L  ++++I
Sbjct: 337 DSIAKAGSMLGSGAVIVMDDSRCMVESLKRLSYFYMHESCGQCTPCREGTGWLWRMVDRI 396

Query: 514 TEGRGTEKDLDTLATLGRVIKDTALCGLGQTSPNPVLSTLDNFRDEY 560
             G G   D+  L  +   I    +C LG  +  PV + + +FR E+
Sbjct: 397 DRGEGKPADMALLDNVAENIMGRTICALGDAAAMPVRAMIKHFRHEF 443