Pairwise Alignments

Query, 1036 a.a., multidrug efflux RND transporter permease subunit from Bacteroides stercoris CC31F

Subject, 1044 a.a., RND efflux system, inner membrane transporter CmeB from Xanthomonas campestris pv. campestris strain 8004

 Score =  800 bits (2067), Expect = 0.0
 Identities = 436/1024 (42%), Positives = 642/1024 (62%), Gaps = 9/1024 (0%)

Query: 5    FFIDRPVFSAVISIVIVIVGIIGLTMLPVDQYPQITPPVVKISASYPGASALTVSQAVAT 64
            FFIDRP+F+ V++I++++ GI+ +  LP+ QYP I PP V I+A+YPGASA T+   V  
Sbjct: 4    FFIDRPIFAWVLAIIVMLAGILSIATLPIAQYPSIAPPAVAITANYPGASAQTLEDTVTQ 63

Query: 65   PIEQEINGTPGMLYMESNSSNSGGFSATVTFDVSADPDLAAVEIQNRIKLAESRLPAEVI 124
             IEQ++ G   + YM S S +SG  + T+TF+   DPD A V++QN++ LA + LP EV 
Sbjct: 64   VIEQKMKGLDNLSYMASTSESSGAVTITLTFENGTDPDTAQVQVQNKLSLATALLPQEVQ 123

Query: 125  QNGISVEKQAPSQLMTICLTSSDPKFDEIYLSNFATINVLDLLRRIPGVGRVSNIGSRYY 184
            Q G++V K A + L  +  TS D    +  LS++   NV + + R+ GVG  +  GS+Y 
Sbjct: 124  QQGVTVTKSATNFLNVLAFTSEDGSMSDSDLSDYVAANVQETISRVQGVGDTTLFGSQY- 182

Query: 185  AMQIWAMPDKLANFGLTVQDLQNALKDQNRESAAGVLGQQP-VQGLDITIPITTQGRLSS 243
            +M+IW  PDKL NF LT  D++ A++ QN + +AG LG  P V    +   IT Q RL +
Sbjct: 183  SMRIWLDPDKLNNFNLTPVDVRAAIQAQNAQVSAGQLGALPAVANQQLNATITAQTRLKT 242

Query: 244  AKQFEDIVVRANANGSIIRLRDVARVSLEASSYSTESGINGENAAVLGIYMLPGANAMEV 303
            A++FE+I++R   +GS +RLRDVAR+ L + SY+T    NG+ AA L I +  GANA++ 
Sbjct: 243  AEEFENILLRTRTDGSQVRLRDVARIELGSESYNTVGRYNGKPAAGLAIKLATGANALDT 302

Query: 304  ADNVKKAMEEISANFPEGMSYEIPFDMTTYISESIHEVYKTLFEALVLVVLVVFLSLQSW 363
               + K++EE    FP GM  + P+D T ++  SI +V  TL EA+VLV LV++L LQ++
Sbjct: 303  VRAIDKSLEEQEKFFPPGMKVQKPYDTTPFVRISIEQVVHTLVEAVVLVFLVMYLFLQNF 362

Query: 364  RATLIPVVAVPISLIGTFGFMLIFGFSLNILTLLGLILAIGIVVDDAIVVVENVEHLMET 423
            RATLIP +AVP+ L+GTFG + +FGF++N LT+  ++LAIG++VDDAIVVVENVE +M  
Sbjct: 363  RATLIPTIAVPVVLLGTFGVLAVFGFTINTLTMFAMVLAIGLLVDDAIVVVENVERVMAE 422

Query: 424  EKLSPYEATKKAMNGLASALIATSLVLCAVFVPVSFLSGITGQLYRQFTITIAVSVLLST 483
            E+LSP EAT+K+M+ +  AL+  +LVL AVFVP++F  G TG +YRQF+ITI  ++ LS 
Sbjct: 423  EQLSPKEATRKSMDQITGALVGVALVLAAVFVPMAFFGGSTGVIYRQFSITIVSAMTLSV 482

Query: 484  VVALTLSPVMCSLILKPDSGKKKNIVFRKINEWLNISNHKYIGVISRVIKHPRRLMSAFG 543
            +VA+ L+P +C+ +LKP  G      F   N   + SN +Y GV+  ++    R M A+ 
Sbjct: 483  LVAMVLTPALCATLLKPGHGMATTGFFGWFNRVFDRSNGRYQGVVRHMLGKGWRYMIAYV 542

Query: 544  MVLIAIFIIHRLIPTSFLPVEDQGYFKVELELPEGSTLERTRIVTDRAVQY--LEQNPYV 601
            +++  + +     P  FLP EDQG   V ++LP G+T  RT  V  +   +  ++Q   V
Sbjct: 543  VIVALVVVGFMKTPVGFLPDEDQGTLFVLVQLPPGATDARTGAVLKQVEHHFLVDQKDSV 602

Query: 602  AYVQNVTGSSPRVGSNQARSELTVILKPWEER--KNTTINKIMEKVEKDLREYPECRVYL 659
            A +  V+G S   G+ Q      V L+PW+ER  K  ++  +  K         + +V+ 
Sbjct: 603  AGIFAVSGFS-FAGTGQNVGFAFVKLRPWDERTGKGQSVTDVAAKAGAFFATLRDAQVFA 661

Query: 660  STPPVIPGLGTSGGFEMQLEARGEATFENLVQAADTLMYYAQKRKELTGLSSSLQSEIPQ 719
              PP +  LG + GF++ L+ R       L+QA + L+    + K L  +  + Q + P+
Sbjct: 662  VAPPAVSELGNATGFDLMLQDRANLGHAALMQARNQLLAELSQDKRLVAVRPNGQEDTPE 721

Query: 720  LYFDVDRDKVKMLGVPLADVFSTMKAYTGSVYVNDFNMFNRIYKVYIQAEAPYREHKENI 779
               ++D  K + +GV +AD+ +T  +  GS YVNDF    R+ KV +QA+APYR + ++I
Sbjct: 722  FKLEIDPHKAEAMGVSIADINNTFSSAWGSTYVNDFIDKGRVKKVMLQADAPYRMNPQDI 781

Query: 780  NLFFVKAANGAMVPLTSLGNASYTTGPGSIKRFNMFTTAVILGSAAQG-YSSGQAMEIME 838
            + +FV+ + G MVP  +   A +T G   ++R+N   +  ILG A  G  SSGQAM+I+E
Sbjct: 782  DRWFVRNSAGTMVPFNAFATARWTQGSPRLERYNSLPSVEILGMALPGAASSGQAMQIVE 841

Query: 839  QIAREHLPDNIGVEWSGLSYQEKKAGGQTGLVLTLVFLFVFLFLAAQYESWTVPIAVLLS 898
              A + LP  IG EW+GLS QEK + GQTGL+  L  L VFL LAA YESW++P +V+L 
Sbjct: 842  AAAAK-LPAGIGFEWTGLSRQEKASTGQTGLLYGLSILIVFLCLAALYESWSIPFSVILV 900

Query: 899  LPVAALGAYLGVAVCGLENDIYFQIGLVMLVGLAAKNAILIVEFAKVQVDNGGDLVQSAI 958
            +P+   G  +   +    ND+YFQ+GL+  +GLA+KNAILIVEFAK   + G  LV +A+
Sbjct: 901  VPLGVFGTLVAAVLTWKMNDVYFQVGLLTTIGLASKNAILIVEFAKELHEGGKSLVAAAL 960

Query: 959  HAAQLRFRPILMTSLAFVLGMLPMVLASGPGSASRQAIGTGVFFGMIFAIVFGIVLVPFF 1018
             AA++R RPILMTSLAF+LG++P+VL SG G+ ++ A+GT V  GMI   V  I  VP F
Sbjct: 961  EAARMRLRPILMTSLAFILGVVPLVLTSGAGAGAQHALGTAVIGGMISGTVLAIFFVPLF 1020

Query: 1019 FVLI 1022
            FVL+
Sbjct: 1021 FVLV 1024