Pairwise Alignments

Query, 214 a.a., ribosome-associated translation inhibitor RaiA from Brevundimonas sp. GW460-12-10-14-LB2

Subject, 190 a.a., SIGMA54 modulation protein from Sinorhizobium meliloti 1021

 Score =  147 bits (370), Expect = 2e-40
 Identities = 81/202 (40%), Positives = 116/202 (57%), Gaps = 18/202 (8%)

Query: 1   MQVQVSGKQVDVGEALGSRISQELEDGVGKYFARGGEDAEVVVSKDGHNFKVDCWVRLAS 60
           M V+VSGK +++G++   RI +++E  V KYF  GG  ++V V K G  F  DC + L +
Sbjct: 1   MSVRVSGKHMEIGDSFRVRIGEQIEQAVTKYFD-GGYSSQVTVEKSGSRFSADCKLHLDT 59

Query: 61  GQTLVTTGMGGDAHSAFTEALDRLEKRVRRYKRRLKDHHIGPKGLSPEKTENAAREVARS 120
           G  L   G   +  SAF  A +R+EKR+RRYKR+LKDHH G    + + +   A  V  S
Sbjct: 60  GVVLQANGQANEPQSAFDAASERIEKRLRRYKRKLKDHHNG----NGQNSTEVAYRVMDS 115

Query: 121 IVLRDPDSVEDDVFGDTGENDGPPPVGMVIAETEHEIRTITVGRAVLELDMTGYPVVLFR 180
           +   D + V DD                ++AET  ++RT++V  AV+ LDMT  PV++FR
Sbjct: 116 VPFED-EEVPDDY------------APTIVAETTKQLRTMSVANAVMALDMTDEPVLMFR 162

Query: 181 NAAHGGLAVVYRRPDGNVGWID 202
           +     L +VYRR DGN+GWID
Sbjct: 163 SPGKDDLNIVYRRNDGNIGWID 184