Pairwise Alignments

Query, 343 a.a., Holliday junction branch migration DNA helicase RuvB from Brevundimonas sp. GW460-12-10-14-LB2

Subject, 334 a.a., Holliday junction DNA helicase RuvB (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  408 bits (1048), Expect = e-118
 Identities = 203/328 (61%), Positives = 255/328 (77%), Gaps = 1/328 (0%)

Query: 3   RVISPEAETGES-FDRALRPQTLSEFVGQSQAKGNLKVFIDAARGRAEALDHVLLFGPPG 61
           R+I P+ +  +   DRA+RP+ L E+ GQ   +  LKVFI AA+ R EALDH+L++GPPG
Sbjct: 6   RLIQPQLQGQDDVIDRAMRPKLLDEYTGQDDTRAQLKVFIQAAKNREEALDHMLIYGPPG 65

Query: 62  LGKTTLAQIVSRELGVGFRATSGPILAKAGDLAAILTNLEPRDVLFIDEIHRLSPQVEEI 121
           LGKTTLA IV+ E+GV  ++TSGP+L KAGDLAA+LTNLE  DVLFIDEIHRLSP VEEI
Sbjct: 66  LGKTTLAMIVANEMGVNIKSTSGPVLEKAGDLAALLTNLEAGDVLFIDEIHRLSPVVEEI 125

Query: 122 LYPAMEDHVLDLIIGEGPSARSVRIDLAPFTLVGATTRAGLLATPLRDRFGIPLRLEFYT 181
           LYPAMED+ LD++IGEGP+ARS+++DL PFTLVGATTRAG L +PLR RFGIPLRLEFY 
Sbjct: 126 LYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGALTSPLRARFGIPLRLEFYN 185

Query: 182 PDELTAVVRGTARKMGAAIDEAGAREIASRARGTPRIAGRLLRRVRDFASAEGAETISKL 241
             +L+ +V  +A+ MG AID  GA EIA R+RGTPRIA RLLRRVRD+A  +    +++ 
Sbjct: 186 VKDLSTIVTRSAQVMGLAIDSEGATEIAKRSRGTPRIANRLLRRVRDYAEVQHDGAVTQN 245

Query: 242 VAARALARLEVDEAGLDSLDRRFLKALIENYGGGPVGMDTLAAAIAEARDAVEDVIEPYL 301
           VA  AL  L+VD  G D +DR+ L A+I+ + GGPVG+D LAAAI E R+ +EDV+EP+L
Sbjct: 246 VAELALNLLDVDGEGFDYMDRKLLLAIIDKFMGGPVGLDNLAAAIGEERETIEDVLEPFL 305

Query: 302 LQQGFIMRTPRGRMACAKAYAHLGLSAP 329
           +QQGFI RTPRGR+A A+AY H G+  P
Sbjct: 306 IQQGFIQRTPRGRIATARAYVHFGMIKP 333