Pairwise Alignments

Query, 970 a.a., DNA polymerase I from Brevundimonas sp. GW460-12-10-14-LB2

Subject, 923 a.a., DNA-directed DNA polymerase (RefSeq) from Shewanella amazonensis SB2B

 Score =  708 bits (1828), Expect = 0.0
 Identities = 417/955 (43%), Positives = 568/955 (59%), Gaps = 49/955 (5%)

Query: 25  LWMIDASAYIFRAYHALPPLTRKSDGLPVGAVQGYCNMLWKLLKDMKGADGPTHLVAIFD 84
           L ++D S+Y++RAY+A P LT  S G   GAV G  NML  LL   +    PT +  +FD
Sbjct: 9   LILVDGSSYLYRAYYAPPHLTN-SKGEATGAVYGVVNMLRSLLSRYR----PTQMAVVFD 63

Query: 85  NSEKTFRNTLYDQYKAHRPPPPEDLVPQFPLVREATAAFGVHCVELPGYEADDLIATYAC 144
               TFRN +Y +YKAHRPP P+DL  Q   +     A G+  + +PG EADD+I T A 
Sbjct: 64  AKGPTFRNEMYQEYKAHRPPMPDDLRSQIAPLHRIIKALGIPLISIPGVEADDVIGTIAI 123

Query: 145 KARDAGGEAVIVSSDKDLMQLIGGGVVMWDPMKDRRLAEPEVFEKFGVGPEKMVDLQALI 204
           +A + G   +I + DKD+ QL+   + + + M D  L   EV  KFGVGPE ++DL A++
Sbjct: 124 QAGNEGRSVLISTGDKDMAQLVNEHITLINTMTDTILGPEEVATKFGVGPELIIDLLAMM 183

Query: 205 GDSVDNVPGAPGIGPKTAAQLLDEYGDLDTLLANAGEIKQPKRRQT------LIDFADQI 258
           GD  DN+PG PG+G KTA  +L   G +  LLA    +     R        + D A+ +
Sbjct: 184 GDKADNIPGLPGVGEKTALAMLTGAGGVAKLLAEPDCVTDLGFRGAKTMAAKIRDNAEML 243

Query: 259 RLSRELVRLTCDAPAPEAIDDFAVRDPDPAILSAFLETMEFRSLQRRVGDGKAGPSDVSA 318
            LS +L  +  D    +     ++ +P+   L A    MEF+     V D K+ P    A
Sbjct: 244 ELSYKLATIKTDVTLEQDWHQLSLSEPNRDELIACYGEMEFKRWLAEVLDNKS-PLGTKA 302

Query: 319 FAPKRAPNLNAPVATPRYGQVVEGPAEVQTFDHAAYECVQTEEALDRWIARATEVGVVGF 378
            AP+               +  E PA         Y  + TE  LD W+ + ++  ++  
Sbjct: 303 AAPQANQ------------ETTESPAAAVI--ETQYHTLLTESELDAWLDKLSKAELIAV 348

Query: 379 DTETDTLSATHAGLCGVSLAVGPNEACYIPLTHEHEPQAGEGGLFGEAGETPEPIHQLDK 438
           DTET +L    A L G+S A+   +A Y+PL H++                P    QL +
Sbjct: 349 DTETTSLDYMQAELVGLSFAIEAGKAAYLPLGHDY----------------PGAPSQLPR 392

Query: 439 PTTLAKLKTLLEDPSVLKVLQNAKYDIAVMARRGIRVAPYD-DTMLMSYVLEGGLHGHGM 497
             TLAKLK LLE+P + KV QN KYD++V+A  GI++     DTML SYV       H M
Sbjct: 393 EATLAKLKPLLENPDIKKVGQNLKYDMSVLANAGIQLKGVAFDTMLESYVFNSVASRHDM 452

Query: 498 DELARLHLGHEPIPFKSVAGTGKSQKSFKHVALKPASEYAAEDADVTLRLWRILKPRLAR 557
           D LA  +LGH+ I F+ +AG G  Q +F  +AL+ A+ YAAEDAD+TLRL + L PRL++
Sbjct: 453 DGLALKYLGHKNISFEEIAGKGAKQLTFNQIALEQAAPYAAEDADITLRLHQHLWPRLSK 512

Query: 558 E-GLSTVYETLERSMPTVLADMELNGVRIDPDRLKRLSSEFGLRMAELEAQAHEIAGRPF 616
           E GL +V+  LE  +  VL+D+E  GV ID   L + S E   ++ ELE  AHEIAG PF
Sbjct: 513 EEGLESVFTELELPLIEVLSDIERRGVLIDSMLLGQQSEELARKIDELEQHAHEIAGEPF 572

Query: 617 NIGSPRQIGEILFGELNLPGGKKTASGQWGTDASVLEELALSHDLPRAILDWRQLSKLKG 676
           N+ S +Q+ E+ F +L  P  KKT  G   T   VL ELAL + LP+ IL+ R L+KLK 
Sbjct: 573 NLSSTKQLQELFFTKLGYPVIKKTPKGAPSTAEEVLVELALDYPLPKIILEHRSLTKLKS 632

Query: 677 TYTDALTAAADPKTDRVHTSYQLAAATTGRLASSDPNLQNIPIRTETGREIRQAFIAAPG 736
           TYTD L    + +T RVHTSY  A A TGRL+SSDPNLQNIPIRTE GR IRQAF+A  G
Sbjct: 633 TYTDKLPLMINGRTGRVHTSYHQANAATGRLSSSDPNLQNIPIRTEEGRRIRQAFVAPEG 692

Query: 737 NVLISADYSQIELRLLAHIGDIPELKRAFKAGLDIHAATASEMFGVPVEGMPSETRRRAK 796
             +++ADYSQIELR++AH+     L RAF  G DIH ATA+E+F V  E + SE RRRAK
Sbjct: 693 KRILAADYSQIELRIMAHLSQDEGLLRAFAEGKDIHRATAAEVFDVAFETVTSEQRRRAK 752

Query: 797 AINFGIVYGISAFGLANQLGIDQGEAGAYIKTYFERFPGIRAYMDKTKAEVRQTGFVSTV 856
           A+NFG++YG+SAFGLA QL I + EA +YI TYF+R+PG+  YM++T+A   + G+VST+
Sbjct: 753 AVNFGLIYGMSAFGLARQLDIPRNEAQSYIDTYFKRYPGVLKYMEETRAMASEQGYVSTL 812

Query: 857 FGRRIHIPAIHSKSGAERQFGERAAINAPIQGAAADIIRRAMIRMPAAL-TKAGLATRML 915
           FGRR+++P I  ++   RQ  ERAAINAP+QG AADII++AMI +   + T+     +M+
Sbjct: 813 FGRRLYLPEIRDRNAMRRQAAERAAINAPMQGTAADIIKKAMIAIQHWIKTETQGEIQMI 872

Query: 916 LQVHDELVFEAPEAEADRAIAVIKRVMENASDPAVALTVPLVVDARAASNWDAAH 970
           +QVHDELVF   E +AD+A A+ ++V E  +  A +L VPL+ +A    NWD AH
Sbjct: 873 MQVHDELVF---EVDADKADALKEKVCELMA-AAASLDVPLLAEAGLGDNWDQAH 923