Pairwise Alignments

Query, 265 a.a., exodeoxyribonuclease III from Brevundimonas sp. GW460-12-10-14-LB2

Subject, 270 a.a., exodeoxyribonuclease III (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  107 bits (266), Expect = 3e-28
 Identities = 85/271 (31%), Positives = 134/271 (49%), Gaps = 22/271 (8%)

Query: 3   LRLATWNINSVRLRIDQVARFVAERAPDVLMLQEIKCTTDQFPRGAFEDMGMPHLRVAGQ 62
           +++ ++NIN +R R+ Q+   +    PD++ LQE K   + FP    E MG  H+   G 
Sbjct: 1   MKIVSFNINGLRSRLHQLQALIDSHQPDIIGLQETKVHDEAFPLAEVEAMGY-HVHYHGG 59

Query: 63  KGWHGVAIASRM-PLEDSDTFQVCKLGHARCV----SARVSG--IDVQNFYIPAGGDVPD 115
           K  +GVA+ S++ PL+    F   +    R +     A+ +G  + V N Y P G  +  
Sbjct: 60  KAHYGVAMLSKVAPLKVQKGFATDEEDAQRRMIIGTFAQANGRPLTVLNGYFPQGESIDH 119

Query: 116 RMLNPKFDHKMDFYEQLTA-IVAKQDKSRPLVMAGDFNIAP-----GEGDVWNHRYM-SK 168
                K+  K  FY+ L A + A       + + GD NI+P     G G+V   R++ + 
Sbjct: 120 ---PTKYPAKRKFYQDLMAHLHANHSNDEDIAIIGDINISPIDLDIGIGEVNRKRWLKTG 176

Query: 169 IVSHTPIEVEALNRLQETGGFADVLRDRFPEPQKLASWWSYRAADFRKSNRGLRLDHIWT 228
             S  P E E L  LQ+  G  D  R   P+  +  SW+ YR+  F   NRGLR+D I  
Sbjct: 177 KCSFQPEEREWLKTLQD-WGLVDTFRQLHPDRSERYSWFDYRSKGF-DDNRGLRIDVILA 234

Query: 229 SPGLTPAVVKDTARIHDDVREWDRPSDHAPV 259
           +P L   +V+  + +  ++R  D+PSDHAP+
Sbjct: 235 TPSLAARLVE--SDVDYELRGIDKPSDHAPI 263