Pairwise Alignments

Query, 400 a.a., molecular chaperone DnaJ from Brevundimonas sp. GW460-12-10-14-LB2

Subject, 378 a.a., chaperone protein DnaJ (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  377 bits (968), Expect = e-109
 Identities = 197/389 (50%), Positives = 257/389 (66%), Gaps = 21/389 (5%)

Query: 3   RDYYEVLGVERTIDAPGLKAAYRKLAMIHHPDRNGGSEESMAKFKELSEAYTVLSDDNKR 62
           RDYYEVLGV R      +K AY++LAM  HPDRN G + + A FKE+ EAY +L+D NK+
Sbjct: 4   RDYYEVLGVGRDASEREIKKAYKRLAMKFHPDRNPGDKAAEASFKEVKEAYEILTDANKK 63

Query: 63  AAYDRYGHAGV--NGGGGGNPFGQGGQGFSDINDIFSQVFGDAFGDAFGGRQGRGQQGGP 120
           AAYD++GHAGV  N GGGG   G GG G       F  +FGD FGD FGG +  G Q   
Sbjct: 64  AAYDQFGHAGVDPNRGGGG---GYGGAGD------FGDIFGDVFGDIFGGGRRGGGQRQA 114

Query: 121 RRGSDLRYDLEITLEQAYKGEDVEIDIPSTMTCDTCEGSGAKPGTKPVTCTTCQGAGRVR 180
            RGSDLRY+LE++LE+A KG   E+ IP+  +CD C+GSGAK GT   TCTTC G G+V+
Sbjct: 115 ARGSDLRYNLELSLEEAVKGLTKELRIPTLASCDVCDGSGAKKGTSATTCTTCHGQGQVQ 174

Query: 181 QANGFFQVERTCPRCHGQGQMIADPCTTCHGHGQVRKTRTLNLKIPAGVDDGSRIRLSGE 240
              GFF V++ CP CHG+G++I DPC  CHG G+V KT+TL++KIPAGVD G RIRL+GE
Sbjct: 175 MRQGFFTVQQPCPTCHGRGKIIKDPCAKCHGDGRVEKTKTLSVKIPAGVDTGDRIRLAGE 234

Query: 241 GDAGQRGGPRGDLYVFISVTPHDLFERDNLDLLVTVPVPMTVAALGGEIDAPCLVSTACD 300
           G+AG+ G P GDLYV +SV  H +F RD  +L   VP+  + AALGGEI+ P L     D
Sbjct: 235 GEAGEFGAPAGDLYVQVSVREHAIFVRDGNNLYCEVPISFSKAALGGEIEVPTL-----D 289

Query: 301 GKCKASVAVPAGAQTGKTVRIKGKGMPHLNGRNRGDLVVELFVETPTDLTARQRELLEEL 360
           G  K S+ +PA  QTG+  R++GKG+  +     GDL+ ++ +ETP +L  RQ+ELL E 
Sbjct: 290 G--KVSLKIPAETQTGRMFRLRGKGVKSVRSHAVGDLLCKVVMETPVNLNERQKELLREF 347

Query: 361 -ALSFGEGQ--NPRNSSFAGKAKRFWADI 386
            A   GE +  +P+   F    K+F+ D+
Sbjct: 348 EATLTGESKKHSPKAEGFFDGVKKFFQDL 376