Pairwise Alignments

Query, 725 a.a., primosomal protein N' from Brevundimonas sp. GW460-12-10-14-LB2

Subject, 737 a.a., primosomal protein N' (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  375 bits (963), Expect = e-108
 Identities = 256/740 (34%), Positives = 381/740 (51%), Gaps = 29/740 (3%)

Query: 6   VLIPLPVPEAFDYEVPEALSLAHGDLAR---GDQVAVPLGPRLIRGVVSEVFETTG-SNR 61
           V +P+P+ + F Y V           A+   G +V VP G + + G+V+ + ++   +  
Sbjct: 7   VALPVPMRQNFTYRVKTNEQNDDSPQAKPQIGVRVKVPFGRQQLIGLVTAITDSCDLAPT 66

Query: 62  RLKAIDSVLDDPPL-PAGVMDFVEWAGRWTLSAPGEMAATAL-----KGL-RAPRPRPER 114
           +LK++   +DD PL P  +     WA R+   + G+M   AL     KGL  AP+     
Sbjct: 67  QLKSVIEFIDDAPLLPESLYKLTLWAARYYFCSQGQMLTQALPVALRKGLDAAPQKIQYW 126

Query: 115 RVRRVGER---SPSRATPARTGVLETLCDRAMPPADLARAAGVSSGVVKGLIDEGVLEII 171
           ++  +G        +  PA+  +LE L   ++   ++  +  ++   +K L ++G +   
Sbjct: 127 QITTIGSNIAPETLKRAPAQKKLLEHLKQTSLTQEEVI-SLELNKTALKTLEEKGWIAQH 185

Query: 172 EIAAEAAFD---RPDPDHAPAALNGDQAASATAMAEGVAGGGFRPFLLDGVTGSGKTEAY 228
           E  A+   D   + + D  P  LN +QA + T + +     G+   LL+G+TGSGKTE Y
Sbjct: 186 EKIAQLNLDWRSQLELDETPHRLNKEQAVAVTVLTQQQ---GYHCTLLEGITGSGKTEVY 242

Query: 229 LEAIARVLRADAAAQILILLPEIALTQALIERIAARFGAAPAEWHSGVAPPRRRQVWEAV 288
           L  +  +L+     Q LIL+PEI LT   I R   RF    A  HSG+   +R + W   
Sbjct: 243 LALLEHILKQ--GKQALILVPEIGLTPQTINRFKRRFRVNVAVLHSGLTDNQRLEAWRQA 300

Query: 289 VAGRCNIVVGARSALFLPFTNLRLIVVDEEHDGSFKQEEGLVYHGRDLAVARARIEGAAV 348
             G+  I++G RSALF P     +I++DEEHD SFKQ+EG+ YH RDLAV R  +E   V
Sbjct: 301 RCGQAAIIIGTRSALFTPMAFPGVIILDEEHDSSFKQQEGVGYHARDLAVMRGHLESIPV 360

Query: 349 VLASATPSLETLWNAQSGRYDWLKLGARHGTAVLPDIALLDLRQNTPDPQTWLSQPLRLA 408
           VL SATPSLE+L NA SGRY  L+LG R G A      ++D++ N P  +  +S PL   
Sbjct: 361 VLGSATPSLESLQNALSGRYHHLQLGERAGNAKKVRQGIIDIK-NLP-LKAGMSAPLINE 418

Query: 409 IGETLLRGEQTLLFLNRRGYAPVVLCRACGHRLTAPDTDSWLVEHRYTGRLVCHLTGFSM 468
           I   L  G Q LLFLNRRG+AP +LC  CGH       D++   H+  G + CH  G   
Sbjct: 419 IRSHLDAGNQVLLFLNRRGFAPALLCHECGHLHECDRCDAFFTVHQSLGEIRCHHCGNQY 478

Query: 469 ARPKLCPSCGAEDSLVSVGPGVERVEEEVRQLFPEARTAVFSSDTAPDARSARALIQRMT 528
           A P+ C +CG+   L+  G G E++ E ++  FP+        DT     S  + +  + 
Sbjct: 479 AIPRQCHNCGS-TMLMGQGIGTEQLAEALQLEFPKYPVVRIDRDTTRLKGSLESHLSAIH 537

Query: 529 DGEIDILVATQAAAKGHNFPRLTLVGVVDADLGLRGGDLRAAERTYQLLAQATGRAGRAD 588
            GE  ILV TQ  AKGH+FP +TLVG++D D  L   D RA ER  QL  Q  GRAGRA+
Sbjct: 538 KGEYKILVGTQMLAKGHHFPDVTLVGLLDVDGALFSADFRAPERFGQLYTQVAGRAGRAN 597

Query: 589 RPGRALLQTWTPEHPVLMALAAGDRDAFVEAEMAEREAASLPPYGRLAAIILSSENAAAV 648
           + G  LLQT   ++P+L  L       F  +++ ER+ A LPP   +  +   + +A   
Sbjct: 598 KLGTVLLQTHQSDNPILRDLLHRGYGEFARSQLKERQMALLPPAWHMVLVRAEAHSALDA 657

Query: 649 EKTANDLAQAIPNAERLEVYGPADAPLALVRGRRRKRLLVRADRDVNL-QAFLRAW--LQ 705
           +   N  A  +P  +  E+ GP  APL    G+ R++L+ +A     L Q F R +  ++
Sbjct: 658 DNFLNSFASLLPQDKEFEIIGPMPAPLDRKAGKFRRQLMFQAKHRHRLQQEFERIYPLVE 717

Query: 706 RVKVPGSVRLTVDVDPYSFL 725
           ++      R ++D DP   L
Sbjct: 718 QLPEAKRCRWSLDRDPQDLL 737