Pairwise Alignments

Query, 1149 a.a., transcription-repair coupling factor from Brevundimonas sp. GW460-12-10-14-LB2

Subject, 1171 a.a., transcription-repair coupling factor from Sinorhizobium meliloti 1021

 Score = 1192 bits (3084), Expect = 0.0
 Identities = 625/1154 (54%), Positives = 797/1154 (69%), Gaps = 21/1154 (1%)

Query: 13   LGGAPEGLDALIVAERIKAGGGVGLFVARDFQRSGSFVQAFQFFSKDIEVLDYPAWDCLP 72
            +G  P G +AL++AE  +AG  V  ++  D Q+     Q   F + DI VL  P WDCLP
Sbjct: 21   IGPVPTGAEALVLAELARAGAPVA-YILSDGQKVADLEQVLGFVAPDIPVLTLPGWDCLP 79

Query: 73   YDRLSPTAGIAAQRMATLTRLAMRKPGDAPVLVVTTVSAAMQRTPPKSVTTQAGFETKVG 132
            YDR+SP+A  +A+R+A L+ L   +    P +V+ T++AA+QR  P+ V     F  + G
Sbjct: 80   YDRVSPSADTSARRLAALSALIAHRRKPHPAIVLVTINAALQRISPQDVIESLAFTARPG 139

Query: 133  RDLDIQALERYFAANGYVRASTVSERGEFAVRGGVVDVYPPGFEEPVRLDMFGSELESIR 192
              + +  L      NG+ R  TV E GEFAVRGG++DVY PG  EP+RLD FG  LE+IR
Sbjct: 140  NQIRMDDLAARLERNGFERVPTVREMGEFAVRGGILDVYVPGSGEPLRLDFFGDTLEAIR 199

Query: 193  TFDPETQRSTGQMTFVSLAPVSEALLDAAAISRFRTGYLNLFGAPG-DDPLYATISEGAR 251
            +FDP +QR+ GQ+  + L P+SE  L    IS FR  YL+LFGA   DD LY  +SEG R
Sbjct: 200  SFDPASQRTIGQVRSLDLNPMSEVSLTPETISHFRKQYLSLFGAATRDDALYQAVSEGRR 259

Query: 252  RQGMEQWLPLFYETLDSLFDYLPDDAAIFLDNQVETARAERWDLVADAYDAR-AEAAKAK 310
              GME WLPLFY+ L+++FDYL D   I  D+    A AER  LV D YDAR A A+  K
Sbjct: 260  YAGMEHWLPLFYDRLETVFDYL-DGFRIVTDHLAREAAAERSKLVLDYYDARLASASPGK 318

Query: 311  GQASAN---RALPPKRLYLDAGDWNQALAGRVVRRFTPFSTGGEDAG------GRLGRTF 361
             Q +     + +PP  LYL A  + +AL      R +PF+    +A        R G  +
Sbjct: 319  SQVTQGTPYKPVPPDMLYLTAKGFGEALNDLNAVRLSPFTEHEGEARQVVNIEARQGLRW 378

Query: 362  A-----AERAQDSVNLFEAVAAHAAALKADGKRVLFASWTEGSSERLATMLADHGLDHIV 416
            A     A+      N+F+    H A  +A G +V+ + WTEGS +RL  +LA+HGL +I 
Sbjct: 379  AKPAGEADNDGTRTNVFDQAVKHIAEKRAKGAKVIVSGWTEGSLDRLLQVLAEHGLANIR 438

Query: 417  AVRDWADVQAAPKDLYLRGVLPVEHGFVTDAVAVISETDILGDRLARPRKKR-RASNFLA 475
             V+  +D+ +         VL +E GF T  + VI E DILGDRL R  K+R R ++F+A
Sbjct: 439  PVKALSDIGSLKPGEAASAVLSLEAGFETGDLVVIGEQDILGDRLVRRSKRRKRGADFIA 498

Query: 476  EASALTTGDLVVHLDHGIGRYEGLKTLEIQQAPHDCLELFYAGESKLYLPVENIDLLTRY 535
            E + L  G  VVH +HGIGR+ GL+T+E   APHDCLEL YA ++KL+LPVENI+LL+RY
Sbjct: 499  EVTGLDEGSYVVHAEHGIGRFVGLRTIEAAGAPHDCLELVYADDAKLFLPVENIELLSRY 558

Query: 536  GSDSEGVQLDKLGGAGWQARKAKAKERLRAMAEGLIALAAKRALRETDAVTPPPGLFAEF 595
            GS+     LDKLGG  WQARKAK K+RL  MA GLI +AA+R  R    +    G++ EF
Sbjct: 559  GSEGTDAVLDKLGGVAWQARKAKLKKRLLDMAGGLIRIAAERHTRHAPVLAAQDGVYDEF 618

Query: 596  CARFPYEETDDQLNAIGDVLEDLGKGTPMDRLICGDVGFGKTEVALRAAFVVAMTGQQVA 655
             ARFPY+ET+DQLN+I  V +DLG+G PMDRL+CGDVGFGKTEVALRAAF+ AM G QVA
Sbjct: 619  AARFPYDETEDQLNSIDAVRDDLGRGRPMDRLVCGDVGFGKTEVALRAAFIAAMNGVQVA 678

Query: 656  IVAPTTLLARQHYKTFTERFAGWPVKVRQLSRMVGSKEATETRAGLKDGSVEIVVGTHAV 715
            +V PTTLLARQH+KTF++RF G P++++Q SR+VGSK+   T+  + +G  +IVVGTHA+
Sbjct: 679  VVVPTTLLARQHFKTFSDRFRGLPIRIQQASRLVGSKDLALTKKEVAEGKTDIVVGTHAL 738

Query: 716  LSEQVGFRDLGLVIVDEEQHFGVKHKEKLKTLRADVHLLTLTATPIPRTLQMALSGIREM 775
            L   + F +LGL+I+DEEQHFGVKHKE+LK L+ DVH+LTL+ATPIPRTLQ+AL+G+RE+
Sbjct: 739  LGSSIKFANLGLLIIDEEQHFGVKHKERLKELKTDVHVLTLSATPIPRTLQLALTGVREL 798

Query: 776  SIIATPPVDRLAVRTYVTPWDPVLVREALLREKYRGGQAYYVAPRLKDLPAIEKFLREQV 835
            S+I TPPVDR+AVRT+++P+D +++RE L+RE YRGGQ++YV PR+ DLP I  FL+  V
Sbjct: 799  SLITTPPVDRMAVRTFISPFDALVIRETLMREHYRGGQSFYVCPRVSDLPEIHDFLKSDV 858

Query: 836  PEVKFVVGHGQMSATQLEEVMSAFYDGEYDVLVSTTIVESGLDIPTANTLIVHRADMFGL 895
            PE+K  V HGQM AT+LE++M+AFY+G YDVL+STTIVESGLD+PTANTLIVHRADMFGL
Sbjct: 859  PELKVAVAHGQMPATELEDIMNAFYEGRYDVLLSTTIVESGLDVPTANTLIVHRADMFGL 918

Query: 896  AQLYQIRGRVGRSKARAFAYLTTDAVKPMTLSAERRLQVLQSLDNLGAGFQLASHDLDQR 955
            AQLYQ+RGRVGRSK RAFA  T    K +T  AERRL+VLQSLD LGAGFQLASHDLD R
Sbjct: 919  AQLYQLRGRVGRSKVRAFALFTLPVNKTLTGPAERRLKVLQSLDTLGAGFQLASHDLDIR 978

Query: 956  GGGNLLGDEQSGHIREVGVELYQQMLEDAVAELREKGEGQAVDRGWSPSINVGASVLIPE 1015
            G GNLLG+EQSGHI+EVG ELYQQMLE+AVAEL  KGE +  D GWSP I+VG  V+IPE
Sbjct: 979  GAGNLLGEEQSGHIKEVGFELYQQMLEEAVAEL--KGEEEIHDTGWSPQISVGTPVMIPE 1036

Query: 1016 DYVPDLNVRLSLYRRLSDAEQAEDREALAAELIDRFGPLPDEAQQLLKIVGIKSNCRKAC 1075
            +YVPDLN+RL LYRRL +    ++ +   AELIDRFGPLP E Q LLKIV +KS CR A 
Sbjct: 1037 EYVPDLNLRLGLYRRLGELTDLKEIDGFGAELIDRFGPLPTEVQHLLKIVYVKSLCRTAN 1096

Query: 1076 IEKIDIGPRGAVLTLRDNSFPNPAGLVGLIQKNHAFWKIRPDQKIVVSGDWPTAEERLKV 1135
            +EK+D GP+G V+  R+  FPNPA LVG I K     KIRPDQ I    +  T E+RL  
Sbjct: 1097 VEKLDAGPKGVVVQFRNKEFPNPAALVGYIAKQGTVAKIRPDQSIFFQRELATPEKRLSG 1156

Query: 1136 AERITADLARVAGA 1149
            A  +   LA +A A
Sbjct: 1157 AAMVMTQLAALAKA 1170