Pairwise Alignments

Query, 1149 a.a., transcription-repair coupling factor from Brevundimonas sp. GW460-12-10-14-LB2

Subject, 1164 a.a., transcription-repair coupling factor (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  738 bits (1904), Expect = 0.0
 Identities = 443/1151 (38%), Positives = 656/1151 (56%), Gaps = 53/1151 (4%)

Query: 22   ALIVAERIKAGGGVGLFVARDFQRSGSFVQAFQFF--SKDIEVLDYPAWDCLPYDRLSPT 79
            A+ +A  I+   G  L V  D   + S      +      I+V  +P  + LPYD  SP 
Sbjct: 30   AVTLASLIRQHQGTTLIVTSDTPTALSLELELNYLLAKTAIKVRLFPDRETLPYDSFSPH 89

Query: 80   AGIAAQRMATLTRLAMRKPGDAPVLVVTTVSAAMQRTPPKSVTTQAGFETKVGRDLDIQA 139
              + +QR+ TL+++   +      +V+  V+  M R PPKS  +   F  K G    +  
Sbjct: 90   QDLISQRLETLSQITHAEHS----VVIVPVTTLMMRLPPKSYLSSNVFVLKKGDKYQLHD 145

Query: 140  LERYFAANGYVRASTVSERGEFAVRGGVVDVYPPGFEEPVRLDMFGSELESIRTFDPETQ 199
            + +     GY     V E GEFA+RG ++D++P G   P+R+++F  E+E+IR FDPETQ
Sbjct: 146  VRQQLTDTGYHLVEQVYEHGEFAIRGSILDIFPTGVNMPLRIELFDDEVETIRHFDPETQ 205

Query: 200  RSTGQMTFVSLAPVSEALLDAAAISRFRTGYLNLFGAPGDDP--LYATISEGARRQGMEQ 257
            RS+  +  V L P  E   D++AI  FR  Y   F     +P  +Y  +S      G+E 
Sbjct: 206  RSSTPVNAVRLLPAKEFPTDSSAIEGFRQRYRRRFEVIVKEPESVYQLVSRNLMPAGIEN 265

Query: 258  WLPLFYETLDSLFDYLPDDAAIFLDNQVE-TARAERWDLVADAYDARAEAAKAKGQASAN 316
            +LPLF++ + +LFDYLP +  +     +E +ARA   ++     D R +  +        
Sbjct: 266  YLPLFFDEVSTLFDYLPKNTQLVTLGDIEKSARAHLQEVEIRYEDRRVDPLRP------- 318

Query: 317  RALPPKRLYLDAGDWNQALAGRVVRRFTP-----FSTGGEDAGGRLGRTFAAERAQDSVN 371
              L PK LYL        L   +   F P     F     D  G   +  A  RA   V+
Sbjct: 319  -LLAPKELYL--------LIEELFAAFKPLPRYQFVAPNPDTNGVAAQIDA--RALPEVS 367

Query: 372  LFEAVAAHAAALK---ADGKRVLFASWTEGSSERLATMLADHGLDHIVAVRDWADVQAAP 428
                +     AL+       R+LF++ +EG  E L  +L    L   V       +Q+  
Sbjct: 368  ANHKLKQPLIALQDYAEQAPRMLFSAESEGRREALLELLGKIQLKPSVFSHFDEFIQSDA 427

Query: 429  KDLYLRGVLPVEHGFVTD-----AVAVISETDILGDRLARPR---KKRRASN--FLAEAS 478
            +   +  V P+  G +       AV++I ET++ G R+++ R   K+R+ SN   +   +
Sbjct: 428  RLGLI--VSPLSRGCLLGLGAQTAVSIICETELFGQRISQQRRREKQRQISNDTLIKNLA 485

Query: 479  ALTTGDLVVHLDHGIGRYEGLKTLEIQQAPHDCLELFYAGESKLYLPVENIDLLTRYGSD 538
             L  G  +VHL+HG+  Y+GL TL+      + L+L Y+G  KLY+PV N+ L++RY   
Sbjct: 486  ELKVGQPIVHLEHGVALYQGLVTLDTGGIVAEYLQLEYSGGDKLYVPVSNLHLISRYSVG 545

Query: 539  SEG-VQLDKLGGAGWQARKAKAKERLRAMAEGLIALAAKRALRETDAVTPPPGLFAEFCA 597
            ++G   L+KLG   W   K KA E++R +A  L+ + A+R  R  ++       +A+F  
Sbjct: 546  ADGETHLNKLGNDTWAKAKNKAIEKIRDVAAELLDVYARRQARPGESCEINDEEYAQFAQ 605

Query: 598  RFPYEETDDQLNAIGDVLEDLGKGTPMDRLICGDVGFGKTEVALRAAFVVAMTGQQVAIV 657
             FP+EET DQ +AI  VL D+   T MDRL+CGDVGFGKTEVA+RAAFV    G+QV ++
Sbjct: 606  GFPFEETVDQESAIHAVLADMQSPTAMDRLVCGDVGFGKTEVAMRAAFVAVNDGKQVVVL 665

Query: 658  APTTLLARQHYKTFTERFAGWPVKVRQLSRMVGSKEATETRAGLKDGSVEIVVGTHAVLS 717
             PTTLLA+QHY+ F +RFA WPV +  +SR   +KE T+    L++G V+IV+GTH +L 
Sbjct: 666  VPTTLLAQQHYENFKDRFADWPVVIEVMSRFRTAKEQTQVLKQLEEGKVDIVIGTHKLLQ 725

Query: 718  EQVGFRDLGLVIVDEEQHFGVKHKEKLKTLRADVHLLTLTATPIPRTLQMALSGIREMSI 777
             +  F +LGL+I+DEE  FGV+ KEK+K LRA+V +LTLTATPIPRTL MA+SG+R++SI
Sbjct: 726  SEAKFENLGLLIIDEEHRFGVRQKEKIKALRANVDILTLTATPIPRTLNMAMSGMRDLSI 785

Query: 778  IATPPVDRLAVRTYVTPWDPVLVREALLREKYRGGQAYYVAPRLKDLPAIEKFLREQVPE 837
            IATPP  RLAV+T+V   DP  VREA+LRE  RGGQ YY+   ++ +    + +   +PE
Sbjct: 786  IATPPAKRLAVKTFVRESDPATVREAILREILRGGQVYYLHNNVETIEKCAQDISTLLPE 845

Query: 838  VKFVVGHGQMSATQLEEVMSAFYDGEYDVLVSTTIVESGLDIPTANTLIVHRADMFGLAQ 897
             + VV HGQM    LE VMS FY   ++VLV TTI+E+G+D+P+ANT+I+ RAD FGLAQ
Sbjct: 846  ARVVVAHGQMRERDLERVMSDFYHQRFNVLVCTTIIETGIDVPSANTIIIERADTFGLAQ 905

Query: 898  LYQIRGRVGRSKARAFAYLTTDAVKPMTLSAERRLQVLQSLDNLGAGFQLASHDLDQRGG 957
            L+Q+RGRVGRS  +A+AYL T   K MT  A +RL+ + +L++LGAGF LA+ DL+ RG 
Sbjct: 906  LHQLRGRVGRSHHQAYAYLMTPHPKRMTTDARKRLEAIDALEDLGAGFMLATQDLEIRGA 965

Query: 958  GNLLGDEQSGHIREVGVELYQQMLEDAVAELREKGE---GQAVDRGWSPSINVGASVLIP 1014
            G LLGDEQSGHI ++G  LY +MLE AV  L++  E    Q +++     + + A  L+P
Sbjct: 966  GELLGDEQSGHISKIGFSLYMEMLESAVKALKQGKEPSLAQMLNQQCEMELRIPA--LLP 1023

Query: 1015 EDYVPDLNVRLSLYRRLSDAEQAEDREALAAELIDRFGPLPDEAQQLLKIVGIKSNCRKA 1074
            EDYV D+N+RLSLY+R++  +  E  + L  ELIDRFG LPD  + L+++   K    + 
Sbjct: 1024 EDYVGDVNIRLSLYKRIASCDSEEALDELKVELIDRFGLLPDATKNLMEMTLYKHQATRL 1083

Query: 1075 CIEKIDIGPRGAVLTLRDNSFPNPAGLVGLIQKNHAFWKIRPDQKIVVSGDWPTAEERLK 1134
               KI++  +G  +    +   +P  ++GL+Q     +++    K+       TA++RL 
Sbjct: 1084 GATKIEVHAKGGSIEFSQDHSIDPGFIIGLLQSQPQIYRMDGPNKLKFILSAETAKDRLA 1143

Query: 1135 VAERITADLAR 1145
            + + +   L++
Sbjct: 1144 LVKLLLEQLSQ 1154