Pairwise Alignments

Query, 1149 a.a., transcription-repair coupling factor from Brevundimonas sp. GW460-12-10-14-LB2

Subject, 1160 a.a., transcription-repair coupling factor (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  630 bits (1624), Expect = 0.0
 Identities = 405/1077 (37%), Positives = 570/1077 (52%), Gaps = 53/1077 (4%)

Query: 33   GGVGLFVARDFQRSGSFVQAFQFFSKDIEVLDYPA--------WDCLPYDRLSPTAGIA- 83
            G   + V RD +           FS D    D P         W  +P   L      A 
Sbjct: 40   GRSAVMVVRDAEELALARGLLTLFSPDASAGDSPLVKPRWESRWVVMPQHPLGARNRDAW 99

Query: 84   AQRMATLTRLAMRKPGDAPVLVVTTVSAAMQRTPPKSVTTQAGFETKVGRDLDIQALERY 143
            A RMA L  L  ++    P  V+ TV   + + PP  +          G ++  + +   
Sbjct: 100  ASRMAALFALGQKR---VPQGVLITVDNFLSKLPPADLFASHELTLACGDEMAPELVLEQ 156

Query: 144  FAANGYVRASTVSERGEFAVRGGVVDVYPPGFEEPVRLDMFGSELESIRTFDPETQRSTG 203
                G+ R   VS  GE AVRG +VD+YPPG+E P+RL+ FG  LE IR FD   QRS G
Sbjct: 157  AVDWGFDRVQMVSRPGEIAVRGDIVDIYPPGYERPLRLEFFGETLEEIRLFDASNQRSLG 216

Query: 204  QMTFVSLAPVSEALLDAAAISRFRTGYLNLFGAPG-DDPLYATISEGARRQGMEQWLPLF 262
            ++  + L PVS  +L A   S+    +  LF      +  YA +  G  R G       +
Sbjct: 217  KLDEMVLLPVSPVVLSAELRSKATARWKRLFSKGMLTEEQYAGLLRGIERHGEGLMPGAY 276

Query: 263  YETLDSLFDYLPDDAAIFLDNQVETARAERWDLVADAYDARAEAAKAKGQASANRALPPK 322
            YE    + ++LP DAA  L  + E   A       +A     EA   K QA    A  P+
Sbjct: 277  YEAPTVVEEWLPRDAAWILPGRKELVDA------VEAAQQNWEALFDK-QAEEGGARQPR 329

Query: 323  RLYL-DAGDWNQALAGRVVRRFTPFSTGGEDAGGRLGRT--------FAAERAQDSVNLF 373
             L L DA    Q    +    F P   G E  G  +           F A  A+D    +
Sbjct: 330  GLVLRDAAPVRQLYEEKDSAGFEPLVMGVERTGVDMPERKLHGFVDLFPAPDARDRP--W 387

Query: 374  EAVAAHAAALKADGKRVLFASWTEGSSERLATMLADHGLDHIVAVRDWADVQAAPKDLYL 433
            +A+ A      A   RVL     E    +   +    G+           ++  PK    
Sbjct: 388  QALVAGLHRFVATHARVLLCFGNERGRRKFLKLAEQDGIT--------PTLRYDPKG--- 436

Query: 434  RGVLPVEHGFVTDAVAVISETDILGDRLARPRKKRRAS------NFLAEASALTTGDLVV 487
            RG++ V   +          T ++G+ + +P+  R A         L +   L  GDL+V
Sbjct: 437  RGLMAVVAPYRAGVELAWDGTLVIGEDVLQPKTDRSARVASGAFRGLDKHEGLQPGDLLV 496

Query: 488  HLDHGIGRYEGLKTLEIQQAPHDCLELFYAGESKLYLPVENIDLLTRY-GSDSEGVQLDK 546
            H D+G+ R+ GL+ +++    +D L L YAG+ +LYLPV+ + L+ R+ G+D     LD+
Sbjct: 497  HRDYGVARFVGLERMDLGGVGNDFLLLEYAGDDRLYLPVDRLSLVQRFKGADDTKPSLDR 556

Query: 547  LGGAGWQARKAKAKERLRAMAEGLIALAAKRALRETDAVTPPPGLFAEFCARFPYEETDD 606
            LGG  WQ+ K KA++ +  +A  L+ + A R + +     P   L+ EF A F +EET D
Sbjct: 557  LGGGAWQSSKDKARKAIEKIAADLVEMYAYRKIAKGYTYGPIGELYREFEASFGFEETPD 616

Query: 607  QLNAIGDVLEDLGKGTPMDRLICGDVGFGKTEVALRAAFVVAMTGQQVAIVAPTTLLARQ 666
            Q  AI DVLED+ K  PMDRL+CGDVGFGKTEVALRAAF  A  G+QVA++ PTT+LA Q
Sbjct: 617  QARAIQDVLEDMDKPVPMDRLVCGDVGFGKTEVALRAAFRAASEGRQVALLCPTTVLAEQ 676

Query: 667  HYKTFTERFAGWPVKVRQLSRMVGSKEATETRAGLKDGSVEIVVGTHAVLSEQVGFRDLG 726
            HY+TF  R AG+PV V  LSR V  ++ TE  A    G V+I++GTH +LS+ V   +LG
Sbjct: 677  HYQTFRSRLAGFPVNVGMLSRFVSKQKQTEVLAAAAKGHVDILIGTHRLLSDDVRLPNLG 736

Query: 727  LVIVDEEQHFGVKHKEKLKTLRADVHLLTLTATPIPRTLQMALSGIREMSIIATPPVDRL 786
            L+++DEEQ FGV+HKEKLK  R +V  LTLTATPIPRTLQ+++SGIRE+S+I T P +R 
Sbjct: 737  LLVLDEEQRFGVRHKEKLKQFRRNVDALTLTATPIPRTLQLSMSGIRELSVIETAPPERK 796

Query: 787  AVRTYVTPWDPVLVREALLREKYRGGQAYYVAPRLKDLPAIEKFLREQVPEVKFVVGHGQ 846
             V T +   D   ++  L RE  R GQ ++V  R++ L    +++R+ VP+ +  + HGQ
Sbjct: 797  PVATALIERDDAALKSILEREIAREGQVFWVHNRVQGLERTTEYVRKLVPDARVGMAHGQ 856

Query: 847  MSATQLEEVMSAFYDGEYDVLVSTTIVESGLDIPTANTLIVHRADMFGLAQLYQIRGRVG 906
            M+   LEE M  F+ GE DVLV T IVESGLD P ANTLIV +A MFGL QLYQ+RGRVG
Sbjct: 857  MTERALEETMHRFWHGELDVLVCTAIVESGLDFPRANTLIVDQAQMFGLGQLYQLRGRVG 916

Query: 907  RSKARAFAYLTTDAVKPMTLSAERRLQVLQSLDNLGAGFQLASHDLDQRGGGNLLGDEQS 966
            RS  +A+A         ++  A  R++V+  +D LGAGFQ+A  DL  RG GN+LG+ QS
Sbjct: 917  RSDRQAYAIFVVPDADNLSDIARERMRVILDMDYLGAGFQVAMEDLRIRGAGNILGEAQS 976

Query: 967  GHIREVGVELYQQMLEDAVAELREKGEGQAVDRGWSPSINVGASVLIPEDYVPDLNVRLS 1026
            GH+  VG+EL+ +MLE+AV  L+     ++V+      +N+G    IPE Y+ D   RL 
Sbjct: 977  GHMTRVGLELFLEMLEEAVTRLKGDPPRESVE----TELNIGIPAHIPEGYIEDARDRLR 1032

Query: 1027 LYRRLSDAEQAEDREALAAELIDRFGPLPDEAQQLLKIVGIKSNCRKACIEKIDIGP 1083
             Y+ LS A  A  ++ +  E+ DR+G  P E +  L ++ +K   R+  +++ DI P
Sbjct: 1033 FYKALSSATDAAAQQDIEMEMRDRYGVFPPELETFLALLVLKRQLRRMQVQRADIYP 1089