Pairwise Alignments

Query, 1149 a.a., transcription-repair coupling factor from Brevundimonas sp. GW460-12-10-14-LB2

Subject, 1160 a.a., transcription-repair coupling factor (RefSeq) from Dinoroseobacter shibae DFL-12

 Score = 1184 bits (3063), Expect = 0.0
 Identities = 626/1149 (54%), Positives = 804/1149 (69%), Gaps = 22/1149 (1%)

Query: 15   GAPEGLDALIVAERIKAGGGVGLFVARDFQRSGSFVQAFQFFSKDIEVLDYPAWDCLPYD 74
            G PEG DA IV        G  +FVARD +R  +   A    +  I VL +P WDCLPYD
Sbjct: 14   GVPEGFDAQIVLREASRPDGQAVFVARDDKRMAAMAAALAVTAPQIPVLRFPGWDCLPYD 73

Query: 75   RLSPTAGIAAQRMATLTRLAMRKPGDAPVLVVTTVSAAMQRTPPKSVTTQAGFETKVGRD 134
            R SP   I+A RMATL  LA   PG  P +++TT+SA  QR P ++   +A F  +VG  
Sbjct: 74   RSSPNPEISATRMATLAALAHGVPG--PFVLLTTLSAVTQRVPARATLAEASFSAQVGGR 131

Query: 135  LDIQALERYFAANGYVRASTVSERGEFAVRGGVVDVYPPGFEEPVRLDMFGSELESIRTF 194
            +D  AL ++    G+V+A TV+E G++A+RGG++D++PPG   PVRLD+FG  L+  R F
Sbjct: 132  IDEAALRQFLTRMGFVQAPTVTEPGDYAIRGGIIDIFPPGQSGPVRLDLFGDVLDGARRF 191

Query: 195  DPETQRSTGQMTFVSLAPVSEALLDAAAISRFRTGYLNLFGAPG-DDPLYATISEGARRQ 253
            D  TQR+T ++  + LAPVSE +LD AAI+RFR  Y   FGA G DDPLY  +S G +  
Sbjct: 192  DAATQRTTEKLDAIELAPVSEIILDPAAITRFRQSYRIEFGAAGTDDPLYEAVSAGRKHA 251

Query: 254  GMEQWLPLFYETLDSLFDYLPDDAAIFLDNQVETARAERWDLVADAYDARAEAAKAKGQ- 312
            GME WLP F++ L++L DY+P+ A++ LD+Q E     RW+ + D Y+ R  A   KGQ 
Sbjct: 252  GMEHWLPFFHDRLETLLDYVPE-ASLILDDQFEAMHLSRWEGIKDQYETRRHALAQKGQM 310

Query: 313  ASANRALPPKRLYLDAGDWNQALAGRVVRRFTPFST----GGEDAGGRLGRTFAAERAQD 368
             +  +  PP+ LY+   D    LA +   + +   +    G  DAGGR+GR FA ER   
Sbjct: 311  GTVYKPAPPETLYIPPADETALLATKRTLQLSVLPSASGPGVTDAGGRIGRNFAPERQSQ 370

Query: 369  SVNLFEAVAAHAAALKADGKRVLFASWTEGSSERLATMLADHGLDHIVAVRDWADVQAAP 428
            +  LFEA+A H    K    +V+ ASW+EG+ ERL  +L D  L  +  +   +D+    
Sbjct: 371  ATGLFEALATHITE-KRKTSQVVIASWSEGARERLRGLLEDQDLSGLTEIARLSDIPEGT 429

Query: 429  KDLYLRGVLPVEHGFV-----TDAVAVISETDILGDRLARPRK-KRRASNFLAEASALTT 482
              ++L  V  ++ GF      +  + VISE D+LGDRL R  K KRRA NFL EA++L+ 
Sbjct: 430  GGVHLL-VWALDEGFEGPDHRSTRLTVISEQDVLGDRLIRTTKRKRRAENFLQEATSLSA 488

Query: 483  GDLVVHLDHGIGRYEGLKTLEIQQAPHDCLELFYAGESKLYLPVENIDLLTRYGSDSEGV 542
            GDLVVH+DHG+G ++GL+T+    APH+CL L YAG  +LYLPVENI+LL+R+G +    
Sbjct: 489  GDLVVHVDHGVGAFKGLETVTAMGAPHECLLLEYAGGDRLYLPVENIELLSRFGQEIG-- 546

Query: 543  QLDKLGGAGWQARKAKAKERLRAMAEGLIALAAKRALRETDAVTPPPGLFAEFCARFPYE 602
             LDKLGG  WQA+KAK KER+R MA+ LI +AA+RALR    + PPP ++  F ARFPY 
Sbjct: 547  MLDKLGGGAWQAKKAKLKERIREMADKLIRIAAERALRRAPMLEPPPDMWEAFSARFPYT 606

Query: 603  ETDDQLNAIGDVLEDLGKGTPMDRLICGDVGFGKTEVALRAAFVVAMTGQQVAIVAPTTL 662
            ETDDQL+AI DV+ DL  GTPMDRLICGDVGFGKTEVA+RAAF+ A++G QVA++APTTL
Sbjct: 607  ETDDQLSAIEDVVHDLAAGTPMDRLICGDVGFGKTEVAMRAAFIAALSGVQVAVIAPTTL 666

Query: 663  LARQHYKTFTERFAGWPVKVRQLSRMVGSKEATETRAGLKDGSVEIVVGTHAVLSEQVGF 722
            LARQHYK+F +RF G+P++VR LSR V +K A +TR GL  GSV+IVVGTHA+L++ V F
Sbjct: 667  LARQHYKSFADRFRGFPLEVRPLSRFVPAKAAADTRKGLAAGSVDIVVGTHALLAKGVRF 726

Query: 723  RDLGLVIVDEEQHFGVKHKEKLKTLRADVHLLTLTATPIPRTLQMALSGIREMSIIATPP 782
             +LGL+I+DEEQ FGV HKE+LK LR+DVH+LTLTATPIPRTLQ++LSG+R++SII TPP
Sbjct: 727  HNLGLLIIDEEQRFGVGHKERLKELRSDVHVLTLTATPIPRTLQLSLSGVRDLSIIGTPP 786

Query: 783  VDRLAVRTYVTPWDPVLVREALLREKYRGGQAYYVAPRLKDLPAIEKFLREQVPEVKFVV 842
            VDRL++RTYV+ +DPV +REALLRE YRGGQ+++V PR+KD+P IE FLR+QVPEV FVV
Sbjct: 787  VDRLSIRTYVSEFDPVTLREALLREHYRGGQSFFVVPRIKDIPEIEAFLRDQVPEVSFVV 846

Query: 843  GHGQMSATQLEEVMSAFYDGEYDVLVSTTIVESGLDIPTANTLIVHRADMFGLAQLYQIR 902
             HGQM+A +L++ M+AFYDG+YDVL++TTIVESGLDIPTANT+I+HRADMFGL+QLYQIR
Sbjct: 847  AHGQMAAGELDDRMNAFYDGKYDVLLATTIVESGLDIPTANTMIIHRADMFGLSQLYQIR 906

Query: 903  GRVGRSKARAFAYLTTDAVKPMTLSAERRLQVLQSLDNLGAGFQLASHDLDQRGGGNLLG 962
            GRVGR+K RA+AYLTT     +T +AE+RL+VL SLD+LGAGF LAS DLD RG GNLLG
Sbjct: 907  GRVGRAKTRAYAYLTTKPRMKLTPAAEKRLRVLGSLDSLGAGFTLASQDLDIRGAGNLLG 966

Query: 963  DEQSGHIREVGVELYQQMLEDAVAELREKG-EGQAVDRG-WSPSINVGASVLIPEDYVPD 1020
            + QSG  REVG ELYQ MLE+A+ +++    EG   D G W+P IN+G  VLIPE YVPD
Sbjct: 967  EAQSGQFREVGFELYQSMLEEAIGKIKSGSLEGLTDDDGQWAPQINLGVPVLIPEAYVPD 1026

Query: 1021 LNVRLSLYRRLSDAEQAEDREALAAELIDRFGPLPDEAQQLLKIVGIKSNCRKACIEKID 1080
            L+VRL LYRRLS      + E  AAELIDRFG LP E   LL IV IK+ C+KA I K+D
Sbjct: 1027 LDVRLGLYRRLSQLTTKVELEGFAAELIDRFGKLPKEVNTLLLIVRIKAMCKKAGIAKLD 1086

Query: 1081 IGPRGAVLTLRDNSFPNPAGLVGLIQKNHAFWKIRPDQKIVVSGDWPTAEERLKVAERIT 1140
             GP+GA +   ++ F NPAGLV  I       K+R D KIVV  DW    +R+K A  I 
Sbjct: 1087 GGPKGATVQFHNDKFANPAGLVKFINDQKGLAKVR-DNKIVVRRDWAKESDRIKGAFSIA 1145

Query: 1141 ADLARVAGA 1149
             DLA  A A
Sbjct: 1146 RDLAVEAKA 1154