Pairwise Alignments

Query, 446 a.a., Sigma-54 interaction domain protein from Bacteroides ovatus ATCC 8483

Subject, 494 a.a., two component, sigma54 specific, Fis family transcriptional regulator (RefSeq) from Shewanella loihica PV-4

 Score =  280 bits (715), Expect = 1e-79
 Identities = 178/499 (35%), Positives = 267/499 (53%), Gaps = 67/499 (13%)

Query: 6   TIIIVDDNKGVLTAIQILLKSYFSKVVALSSPVTLTSVLREEMPEVVLLDMNFTSGINTG 65
           TI+IVDDN+ V +A+ ++L+    K +   SP     ++ E+   +V+ DMNFT    +G
Sbjct: 3   TILIVDDNQAVCSALSLMLELNGFKTLTCFSPEEALGLVAEQEIALVIQDMNFTQDTTSG 62

Query: 66  NEGLFWLHEIKKVRPDLPVVLFTAYADIELAIRGIKEGATDFIVKPWDNQKLVETLQTAA 125
            EG    ++I+  +P LP++L TA+  +ELA+  +KEGA D++ KPWD+ KL+ ++    
Sbjct: 63  EEGKRLFYDIRACQPQLPIILLTAWTQLELAVELVKEGAADYMGKPWDDDKLLNSVNNLI 122

Query: 126 TSTHNDRKTASKEKPVHSPM-----------YWGESKVMQQLRALIKKVAVTDANLLITG 174
           +     R+ +   +  H  M            +G S  MQ+   L  ++A +D ++LITG
Sbjct: 123 SLHALSRQNSQLARSEHQRMSAIKDADLCGIVFG-SGAMQRCIDLALQIAKSDVSVLITG 181

Query: 175 ENGTGKEMLAREIHALSNRKYKEMIAVDMGTITESLFESELFGHIKGSFTDAHTDRTGKF 234
            NG GK+ LA  +HA S  K+K  I V++G +   L E+ELFG   G+FT A+  R G+F
Sbjct: 182 PNGAGKDKLADILHANSPLKHKPFIKVNIGALPMELLEAELFGAEAGAFTGANKARIGRF 241

Query: 235 EAAEKSTLFLDEIGNLPYHLQAKLLTAIQRRSIVKVGSNTPIPIDIRLICATNRNLQEMV 294
           EAA+  TLFLDEIGNLP   Q KLL  +Q     ++GS+    + +R+I ATN +L E +
Sbjct: 242 EAADGGTLFLDEIGNLPLSGQVKLLRVLQTGEFERLGSHQTRKVKVRVISATNADLAEDI 301

Query: 295 AKGEFREDLLYRINTIHVEIPPLRERKEDIIPLAERFMVHFCKQYDKSLMKFTPEAKDKL 354
           A G FREDL YR+N I + +PPL +R++DI+PL      HF  Q D SL K T +A   L
Sbjct: 302 ASGRFREDLFYRLNVIELALPPLNQRQDDILPLVN----HFIGQ-DFSLSKPTQQA---L 353

Query: 355 TAHPWYGNIRELEHVIEKAVIINDSPLIPAELFQL------------------------S 390
            ++PW GN+RELE+  ++AVI+  SP++    F L                        S
Sbjct: 354 VSYPWPGNVRELENACKRAVILAASPMLTMADFGLKPVNGLKPVSGLNPVSGAPSTSSVS 413

Query: 391 VPRIAIQEQSISTLE-----EMEVQM------------------IRKAFDACAGNLSAVA 427
            P     +Q+    +     E EV+                   I  A     G ++ VA
Sbjct: 414 APSPVASQQAQEQRQKPRFAEQEVETDRAPTVDSASRGEPTGADIELALAEHNGVIARVA 473

Query: 428 AQLGITRQTLYNKMKKFGL 446
             LG++RQ LY +M+KFG+
Sbjct: 474 KSLGLSRQALYRRMEKFGI 492