Pairwise Alignments

Query, 194 a.a., electron transport complex, RnfABCDGE type, E subunit from Bacteroides ovatus ATCC 8483

Subject, 210 a.a., NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrD (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  129 bits (323), Expect = 5e-35
 Identities = 75/196 (38%), Positives = 110/196 (56%), Gaps = 10/196 (5%)

Query: 5   KVMMNGIIKENPTFVLLLGMCPTLGTTSSAINGMGMGLATMFVLICSNVVISLIKNLIPD 64
           +V+   I+  NP  + +LG+C  L  TS     + M LA   V   SN+ IS+I+N IP 
Sbjct: 9   QVLTGPIVNNNPIALQVLGVCSALAVTSKLETALVMALALTAVTAFSNLFISMIRNHIPS 68

Query: 65  MVRIPSFIVVIASFVTLLQMVMQAYVPGLYATLGLFIPLIVVNCIVLGRAEAFAAKNNAV 124
            VRI   + +IAS V ++  ++QAY   +   L +F+ LI+ NCIV+GRAEA+A K   +
Sbjct: 69  SVRIIVQMTIIASLVIVVDQLLQAYAYQISKQLSVFVGLIITNCIVMGRAEAYAMKTPPM 128

Query: 125 ASMFDGIGMGLGFTIALTLLGAVREFLGTGKIFDLTIMP--------EEYGMLVFVLAPG 176
            S  DGIG GLG+   L  +G VRE  G G +F + I+         +  G+L  +L P 
Sbjct: 129 MSFMDGIGNGLGYGAILLAVGFVRELFGNGSLFGVQILHKISDGGWYQPNGLL--LLPPS 186

Query: 177 AFIALGYLIALINSFK 192
           AF  +G LI +I ++K
Sbjct: 187 AFFLIGMLIWIIRTYK 202