Pairwise Alignments

Query, 333 a.a., transposase, IS116/IS110/IS902 family from Bacteroides ovatus ATCC 8483

Subject, 319 a.a., IS110 family transposase from Rhodopseudomonas palustris CGA009

 Score = 70.5 bits (171), Expect = 5e-17
 Identities = 81/321 (25%), Positives = 135/321 (42%), Gaps = 23/321 (7%)

Query: 8   GIDISKKTLDVVIYVPTKKHADETNYERFLNKEEGYKSLLCWLKKKNMAKKRLVISMENT 67
           G+D  ++ LDV +       A      R  N  EG   ++  L++  + +    + +E  
Sbjct: 12  GVDAGQRFLDVAL-------APSGQTFRMPNLAEGIAEIIARLERSGVRR----VVLEAI 60

Query: 68  GIYSFDLCLFLEAASIDYCSFNPLHLK--RSLGLVRGKNDRVDAERIAYFAYLHRDELSY 125
           G Y+  L   L  A  +    NP  +K  R     R K DR+DA  IA FA    + L  
Sbjct: 61  GPYAEPLVKALSVAGFEVGIVNPRRIKAFREAEGSRAKTDRLDARLIARFALTMPETL-- 118

Query: 126 SKLSGSSIIRLRDFAAERKRFVKQQAEYKGFLTDRKDCEMTSTIERAAHMVKILDEEIAS 185
             L   + + L+  +  R++  +  A  K   T  K    T  ++     +  L  +  +
Sbjct: 119 RPLPTDTQLELKALSLRRRQLTEMIAMEK---TRMKQVRGTLLLDSHRAAIAALSAQCQA 175

Query: 186 VEEEMLQIINSDPSILRNYELLNSIKGIGTINAMNTIIHTNNFQAFETARQ-YACYLGIA 244
           +E E+ + I  D  + R   +L SI GIG    + T++ T+  +  +  R+  A   G+A
Sbjct: 176 IEAELAKRIGDDAELRRVLHILKSIPGIG--ERVATLLITDLPELGQRDRKAIASLAGLA 233

Query: 245 PFEHSSGTSIKGKTRVYPTGAKLLKADLSQAANSAIVWDKEMKEYYERKRKEGKAYGVVL 304
           P  H S +           G   ++A L  AA  A     ++++ Y   R +GK   V L
Sbjct: 234 P--HVSQSGAAPPRAAIAGGRPCVRAALYMAALVAARHHPKLRDDYNALRLQGKPGKVAL 291

Query: 305 NAVKFKLVGRMFAVVKRGTPF 325
            A+  KL+    A+VK  TP+
Sbjct: 292 IAIARKLLVTANALVKADTPY 312