Pairwise Alignments

Query, 413 a.a., efflux ABC transporter, permease protein from Bacteroides ovatus ATCC 8483

Subject, 656 a.a., ABC transporter, ATP-binding/permease protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  128 bits (321), Expect = 6e-34
 Identities = 105/412 (25%), Positives = 195/412 (47%), Gaps = 31/412 (7%)

Query: 12  LITITRNKTRSLLTAFGVFWGIFMLVALIGGGQGLEDMMKKNFEGFATNSGFLVSQRTGE 71
           L+ ++ ++ R+ LT  G+  GI  +V+++  G+G +  + K+     TN+   +  R G 
Sbjct: 266 LLAMSTHRLRTFLTMLGIIIGIASVVSVVALGEGSQREILKSISSMGTNT---IDIRPGL 322

Query: 72  AYKGFRKGRWWNLESTDIDRLRSQVKEVEIITPSVA-----RWGSKAVYEDKKYDCSVKG 126
            +   R  R   L ++D + L++ +  V+ +TPS++     R G+KAV        SV G
Sbjct: 323 GFGDRRSARVRTLTASDANALKN-LPYVDSVTPSISSSVTVRLGNKAV------TASVNG 375

Query: 127 LYPDYLHIESQEMAYGRFINEVDIKEARKVCVIGKRIYESLFKPGEDPCGKYVR----VD 182
           + P++  +   E+A G+F ++  +    +  VI     + LF       G  +     + 
Sbjct: 376 VGPEFFRVRGYELAQGQFWDDDSVDALAQDAVIDDNTRKQLFPDSTGAMGSVIGQVIFLG 435

Query: 183 GIYYQVIGMSSSEGDMNIQGRASEAVTLPFTTMQQTYNLGGRIDVICFTAKHGVKVSEIQ 242
            +  ++IG++  +        A   V +P+TT+         +D I       V  +  +
Sbjct: 436 DLPVRIIGVTKPKESAFGNSDALN-VWVPYTTVSGRMVGKKYLDGITVRLDESVPSNAAE 494

Query: 243 PKMEQVIKAAHYISPDDKQAVMCLNAEAMFSMVDNLFTGINILVWMVGLGTLLAGAIGVS 302
             +  ++K  H       Q    +N + +   ++     + +L+  + + +L+ G IGV 
Sbjct: 495 QGIITLLKMRH-----GTQDFFTINTDTIRQNIEKTTATMTLLISAIAVISLVVGGIGVM 549

Query: 303 NIMMVTVKERTTEIGIRRAIGARPKDILQQILSESMVLTTIAGMCGISFAVMVLQLVEMG 362
           NIM+V+V ERT EIG+R A+GAR  DIL+Q L E++++    G  G++ A ++  +    
Sbjct: 550 NIMLVSVTERTREIGVRMAVGARQSDILRQFLIEAVLVCLCGGALGVALAYLIGVVF--- 606

Query: 363 ANADGG-DTRFQVTFGLAIGTCALLIALGMLAGLAPAYRAMAIKPIEAIRDE 413
           A A G     +  T  +A   C+ LI  G+L G  PA  A  + P+EA+  E
Sbjct: 607 AQAGGSFQMIYSTTSIVAAFACSTLI--GVLFGFLPARNAARLDPVEALARE 656