Pairwise Alignments

Query, 432 a.a., TRAP transporter large permease from Bosea sp. OAE506

Subject, 465 a.a., C4-dicarboxylate transport protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  294 bits (753), Expect = 3e-84
 Identities = 162/460 (35%), Positives = 264/460 (57%), Gaps = 35/460 (7%)

Query: 1   MLVSAVLIGVCVVIMLGVPIAVALGLVAIGTMVATVGPDLLVIFIQRTYAGTTSFPLLAI 60
           M ++ +   + + + LG+PIA+ALG  ++ T++      L  + ++   + +  + LLAI
Sbjct: 1   MAIATLFCVLFICMFLGMPIAIALGFSSMLTILFFSNDSLASVALKLYESSSEHYTLLAI 60

Query: 61  PFFVLAGNLMNVGGTTERIFQVAQLCMGRVRGGLAHVNVIGSVIFAGMSGSAVADAAGLG 120
           PFF+L+   ++ GG   RI   A  C+G +RGGLA  +V+  ++FA +SGS+ A  A +G
Sbjct: 61  PFFILSSAFLSTGGVARRIIDFAMDCVGHIRGGLAMASVMACMLFAAVSGSSPATVAAIG 120

Query: 121 VIEHRAMTKAGYTGRFAATITAVSATIGPVIPPSIPFVIYGSLANVSVGALFLAGIVPGL 180
            I    M KAGY  +FA+ +   S T+G +IPPSI  ++Y +   VSV  +F+AG+VPGL
Sbjct: 121 SIVIVGMVKAGYPEKFASGVITTSGTLGILIPPSIVMLVYAAATEVSVAKIFMAGLVPGL 180

Query: 181 LMALSLMAVIALVARKMNLPRGEGLPPLRDIGRIVLRAMPALLLPPAILAVIFTGIATPT 240
           L+   +M VI +VAR  NLP     P  + +G    +A+  L L   +L  I+ G+A+PT
Sbjct: 181 LLGFLIMVVIYIVARIKNLP-SIPFPGFKKLGVSSAKAIGGLALIFIVLGSIYGGVASPT 239

Query: 241 EAAVVAAGYAFVLGRFVYRELSWTDTLA-------------------------------- 268
           EA+ VA  YA+ +  F YR++     +A                                
Sbjct: 240 EASAVACVYAYFIAVFGYRDIGPLKNVAWRNPNEAIPSAIARNLGHMVLGLIKTPIDKEI 299

Query: 269 --VLWDSARQTAQVMFIIALAAPFGWVLVQQQIPNAVLASLLTLSSEPWVILLVINLALL 326
             V+ D A+ +  ++FIIA A  F  VL  ++IP+ +   ++ +    W  L+++NL LL
Sbjct: 300 RHVVRDGAKVSIMLLFIIANAMLFAHVLTTERIPHIIAEYIVGMGLPAWGFLIIVNLLLL 359

Query: 327 LFGMFIEGIAIMIIAYPVLLPVITQIGVDPVHFGVILVLNIMIGLVTPPVGLCLYVVAGI 386
             G F+E  AI++I  P+L P+ TQ+G+DP+H G+I+V+N+ IG++TPPVGL L+V +GI
Sbjct: 360 AAGNFMEPSAIVLIMAPILFPIATQLGIDPIHLGIIMVVNMEIGMLTPPVGLNLFVTSGI 419

Query: 387 AKISIAEITREIWPYVLALIGVLLLITYVPAVSLWLPHTL 426
              +I  + + + P+++ ++  L+LITYVP +SL+LP  L
Sbjct: 420 TGRNIGWVIQSVLPWLVFMLAFLMLITYVPQISLFLPELL 459