Pairwise Alignments

Query, 454 a.a., sigma-54 dependent transcriptional regulator from Bosea sp. OAE506

Subject, 446 a.a., flagellar regulatory protein C (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  286 bits (731), Expect = 1e-81
 Identities = 176/424 (41%), Positives = 252/424 (59%), Gaps = 34/424 (8%)

Query: 34  EQTLAVLRSKGADLLMVEVTLPVAQFVAAL---EAERIRTPIVACGTSTDARAAVAAIQA 90
           E+ +  L+    DL++ +V +P    +  L   +    + P++         +AV+AI+ 
Sbjct: 37  EEAILALKQHQFDLVISDVQMPGIGGLGLLNYLQQHHPKLPVLLMTAYATIGSAVSAIKL 96

Query: 91  GAREYVPLPPDPELIAAVL-----------EAVAADQSSLIWKDPAMERVVQLVGQIARS 139
           GA +Y+  P  PE++   +           + V AD+ SL         ++ L  ++A S
Sbjct: 97  GAVDYLAKPFAPEVLLNQVSRYLPLKQNRDQPVVADEKSL--------SLLSLAQRVAAS 148

Query: 140 DAPVLVTGESGTGKEVIARHLHQKSLRKDKPFVAVNCAAIPDNLLESELFGHEKGAFTGA 199
           DA V++ G SG+GKEV+AR++HQ S R ++ FVA+NCAAIP+N+LE+ LFG+EKGAFTGA
Sbjct: 149 DASVMILGPSGSGKEVLARYIHQHSSRAEEAFVAINCAAIPENMLEATLFGYEKGAFTGA 208

Query: 200 IARRIGKFEEANGGTLLLDEISEMDVRLQAKLLRALQERMIDRVGGTTPVKVDLRIIATS 259
                GKFE+A GGTLLLDEISEMD+ LQAKLLR LQER ++R+GG   +K+D+R++ATS
Sbjct: 209 YQACPGKFEQAQGGTLLLDEISEMDLGLQAKLLRVLQEREVERLGGRKTIKLDVRVLATS 268

Query: 260 NRNLGDAVREGSFREDLFYRLNVVHLRLPALRERPGDILALADHFARKYAE-LNGMPLRP 318
           NR+L   V  G FREDL+YR+NV  L  PAL +RP DIL LA H   K+A+ LN + L  
Sbjct: 269 NRDLKAVVAAGQFREDLYYRINVFPLTWPALNQRPADILPLARHLLTKHAKALNVVDLPE 328

Query: 319 IAPDARKLLLTNAWRGNVRELENTIHRAVLLARGNEIGTEAVMTPEGETLGPASGRDSAA 378
               A + LL++ W GNVREL+N + RA++L  G  I    ++    +   P +  D   
Sbjct: 329 FDDAACRRLLSHRWPGNVRELDNVVQRALILRAGALITANDIIIDAQDV--PLTSDD--- 383

Query: 379 RAAQTAEAMTR-SLVGHTVADVERELILDTLDHCLGNRTHAAKILGISIRTLRNKLSEYT 437
                AE M+    +G  +   E  +IL+TL  C G+R   A+ LGIS RTLR K++   
Sbjct: 384 -----AEYMSEPEGLGEELKAQEHVIILETLVQCQGSRKLVAEKLGISARTLRYKMARMR 438

Query: 438 SAGI 441
             GI
Sbjct: 439 DMGI 442