Pairwise Alignments

Query, 886 a.a., excinuclease ABC subunit UvrB from Bosea sp. OAE506

Subject, 673 a.a., excinuclease ABC, B subunit (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  764 bits (1974), Expect = 0.0
 Identities = 390/669 (58%), Positives = 491/669 (73%), Gaps = 13/669 (1%)

Query: 142 FRMNSEYEPAGDQPAAIAELVEGIARQERDQVLLGVTGSGKTFTMAQVIEKTQRPALILA 201
           F++ S++ PAGDQP AIA+LV+G+      Q LLGVTGSGKTFT+A VI K  RP +I+A
Sbjct: 6   FQLESQFAPAGDQPTAIAKLVDGLESGLACQTLLGVTGSGKTFTIANVIAKLGRPTIIMA 65

Query: 202 PNKTLAAQLYGEFKSFFPDNAVEYFVSYYDYYQPEAYVPRSDTFIEKESSINEQIDRMRH 261
           PNKTLAAQLYGE K FFP+NAVEYFVSYYDYYQPEAYVP S+TFIEK++S+N  I++MR 
Sbjct: 66  PNKTLAAQLYGEMKEFFPNNAVEYFVSYYDYYQPEAYVPASNTFIEKDASVNAHIEQMRL 125

Query: 262 SATRSLIERDDVIIVASVSCIYGIGSVETYTAMTFGIKLGERVEQRQLIADLVALQYKRT 321
           SAT++L+ER DV+++ASVS IYG+G  ++Y  M   ++ G+ + QR ++  L  LQY R 
Sbjct: 126 SATKALLERKDVVLIASVSAIYGLGDPDSYLKMLLHLRQGDTMGQRDILKRLSELQYTRN 185

Query: 322 QHDFTRGSFRVRGDVIELFPAHYEDRAWRIGLFGDEVESIAEFDPLTGQKTADLEFVKVY 381
             +  RG+FRVRG+VI++FPA  +  A R+ LF DE+E ++EFDPLTGQ    +    VY
Sbjct: 186 DIELQRGTFRVRGEVIDIFPADSDRYAIRVELFDDEIERLSEFDPLTGQIVKRIARTTVY 245

Query: 382 GNSHYTTPRPTLTQAVKSIKQELKARLDELNSMGRFLEAQRLDQRCTFDIEMIEATGSCN 441
             +HY TPR  + +A + IKQEL+ R   L    + +EAQR+ +R  +DIEM+   G C+
Sbjct: 246 PKTHYVTPREKILEATELIKQELRERKQYLLDNNKLIEAQRIHERVQYDIEMMVELGYCS 305

Query: 442 GIENYSRYLTGRKPGEPPPTLFEYLPDNALVFTDESHVTVPQIGGMYRGDFRRKATLAEY 501
           GIENYSRYL+GR PGE PPTL +YLP + L+  DESHVTVPQIG MY+GD  RK TL EY
Sbjct: 306 GIENYSRYLSGRAPGEGPPTLLDYLPADGLLVIDESHVTVPQIGAMYKGDRSRKTTLVEY 365

Query: 502 GFRLPSCMDNRPLRFEEWDAMRPQSVHVSATPGSWEMEQTGGVFTEQVIRPTGLIDPPVE 561
           GFRLPS +DNRPL+FEE++ + PQ+++VSATP S+E+E++GG   EQV+RPTGL+DP +E
Sbjct: 366 GFRLPSALDNRPLKFEEFEQLMPQTIYVSATPNSYELEKSGGEIVEQVVRPTGLLDPELE 425

Query: 562 IRPAKHQVADLLDEIKDVTAAGYRTLVTVLTKRMAEDLTEYLHENGVRVRYMHSDIDTIE 621
           +RP   QV DLL E+    A   R LVT LTKRM+EDLTEYL E+GV+VRY+HSDIDT+E
Sbjct: 426 VRPVGIQVDDLLSEVAKRVAVNERVLVTTLTKRMSEDLTEYLDEHGVKVRYLHSDIDTVE 485

Query: 622 RIEILRDLRLGAFDVLVGINLLREGLDIPECGFVAILDADKEGFLRSETSLIQTIGRAAR 681
           R+EI+RDLRLG FDVLVGINLLREGLD+PE   V ILDADKEGFLRSE SLIQTIGRAAR
Sbjct: 486 RVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVCILDADKEGFLRSERSLIQTIGRAAR 545

Query: 682 NVDGKVILYADQVTGSMERALAETSRRREKQLAYNAEHGITPQTIKRAIGDIL----GSV 737
           NV+GKVILYAD++T SM +A+ ET RRREKQ  YN EHGI P+ + + I D++    G  
Sbjct: 546 NVNGKVILYADRITNSMAKAIGETERRREKQRLYNLEHGIVPKGVVKRITDVMDVDDGRE 605

Query: 738 YERDHVTVDAGLGTPAAGHNFKAALAD-------LEKRMREAAADLEFETAARLRDEIKR 790
            E+ H     G         + A  A        LEK+M E A +LEFE AA LRDE+KR
Sbjct: 606 AEKGHGQASLGRVAEPKAKRYHADAAQLSHDIDKLEKQMHEHARNLEFEQAAALRDEVKR 665

Query: 791 LQATELAIS 799
           L+  EL IS
Sbjct: 666 LR--ELLIS 672