Pairwise Alignments

Query, 1016 a.a., DNA polymerase I from Bosea sp. OAE506

Subject, 922 a.a., DNA polymerase I (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  636 bits (1640), Expect = 0.0
 Identities = 394/1001 (39%), Positives = 555/1001 (55%), Gaps = 94/1001 (9%)

Query: 23   LFLVDGSNFIFRAYFQSINQDRKYNVRSDGLPSGAVRLFATKLFQFVREGVLGVRPTHLA 82
            L LVDGS++++RAY+        +   S G  +GAV      +   +R  +   +P+H+A
Sbjct: 9    LVLVDGSSYLYRAYYAP-----PHLTNSKGEATGAVY----GVVNMLRSLLSRYQPSHIA 59

Query: 83   IVFDKSENSFRKAIYPAYKGNRSDPPPDLIPQFPLMREAVRAFGLLPVEQDVYEADDLIA 142
            +VFD    +FR  +Y  YK +R   P DL  Q   +   +RA GL  +     EADD+I 
Sbjct: 60   VVFDAKGKTFRNDLYQEYKAHRPPMPDDLRSQIEPLHRIIRALGLPLISIPGVEADDVIG 119

Query: 143  TYAKQAREAGADVLIVSADKDLMQLVRPGVAMYDPASGDAKKGAGFRAERRIGEPEVVEY 202
            T A++A      VLI + DKD+ QLV   + + +  +           +  +G  EV   
Sbjct: 120  TIARRASRENRAVLISTGDKDMAQLVDENITLINTMT-----------DTIMGPEEVAAK 168

Query: 203  FGVMPDKVTDVQALAGDATDNVPGAPGIGIKTAAQLIGEYGDLDTLLARAGEIKQPKRRE 262
            +GV PD++ D  AL GD  DN+PG PG+G KTA  ++   G +  LLA   ++ +   R 
Sbjct: 169  YGVGPDRIIDFLALMGDKADNIPGLPGVGEKTALAMLTGAGSVANLLAEPEKVSELAFRG 228

Query: 263  TLTNPEIV----EKIRISHKLVSLVDDVVVETPLEDLTLGQPDPVRLVAFLKAMEFTTIT 318
            + T    +    + +R+S++L ++  DV +E    +LT    D   L+     MEF    
Sbjct: 229  SKTMAAKIIDNADMLRLSYELATIKTDVELEQDWHELTAKPADRDELIKCYGEMEFKRWL 288

Query: 319  KRVGEAYEADVAAIDADADLAPGGTRAAELKALHVGADAAGEAPSVAEMARAAVTQPVST 378
              + +                                    +AP+    A   V     T
Sbjct: 289  AEILD-----------------------------------NKAPATIATATTTVETEADT 313

Query: 379  TGGEGWLKPADLAAARKGEALAAKIDRTGYDCVRDLASLERWVAAAFEAGHVAIDTETSA 438
            T                  +LA +   T YD +   A L+ W+A   +A   A+DTET++
Sbjct: 314  T-----------------PSLALE---TQYDTILTEAQLDEWIAKLKQASLFAVDTETTS 353

Query: 439  IDPMQADLVGISLAVAPGKACYIPLQHRGGTDLFGGGMLEGQIPLDQALAALKPLLTDPG 498
            +D M A+LVG+S AV  GKA Y+PL H    D  G      Q+    AL  L+P+L D  
Sbjct: 354  LDYMVAELVGMSFAVEAGKAAYLPLAH----DYVGAPQ---QLDKQFALEKLRPILEDAK 406

Query: 499  VVKIGQNLKYDLVLLKRYGVDVAPID-DTMLISYALDAGNNSHGMDRLSELHLGHETITF 557
            + K+GQNLKYD+ +L   G+ +  +  DTML SY  ++  + H MD L+  +LGH+ I F
Sbjct: 407  LKKVGQNLKYDISVLANAGITLQGVAFDTMLESYVFNSVASRHDMDGLALKYLGHKNIAF 466

Query: 558  GQVAGTGKAQVTFDKVALDKATDYAAEDADVTLRLWRTLKPRLAAEGR-TTVYETLERPL 616
              +AG G  Q+TF++++L+ A  YAAEDAD+TLRL + L PRL  E    +V+  +E PL
Sbjct: 467  EDIAGKGAKQLTFNQISLETAAPYAAEDADITLRLHQHLWPRLEKEAELASVFTDIELPL 526

Query: 617  IAVLARMEAHGISIDRQILSRLSGDFAQSLARLEDEIYEIAGEKFTIGSPKQLGDILFGK 676
            I +L+ +E  G+ ID  +L + S + A+ +  LE + Y+IAGEKF + SPKQL  + F K
Sbjct: 527  IHILSDIERQGVFIDSMLLGQQSEELARKIDELETKAYDIAGEKFNLSSPKQLQVLFFEK 586

Query: 677  MGLSGAKKTATGQWATGAGVLEELAEQGHPLPSKILEWRQLSKLKSTYTDSLPAYVNPQT 736
            +G    KKT  G  +T   VL ELA    PLP  ILE R L+KLKSTYTD LP  VN +T
Sbjct: 587  LGYPVIKKTPKGAPSTAEEVLVELALD-FPLPKVILEHRSLTKLKSTYTDKLPLMVNAKT 645

Query: 737  QRVHTSFALAATTTGRLSSSEPNLQNIPIRTEAGRKIRTAFVAEKGYKLVSADYSQIELR 796
             RVHTS+  A   TGRLSSSEPNLQNIPIRT  GR+IR AF+A +G K+++ADYSQIELR
Sbjct: 646  GRVHTSYHQANAATGRLSSSEPNLQNIPIRTVEGRRIRQAFIAPEGRKILAADYSQIELR 705

Query: 797  LLAHIAEIPQLRQAFADGIDIHAMTASEMFGVPVQGMPSEVRRRAKAINFGIIYGISAFG 856
            ++AH+++   L  AFA+G DIH  TA+E+FG     + SE RRRAKA+NFG+IYG+SAFG
Sbjct: 706  IMAHLSQDAGLLNAFAEGKDIHRATAAEVFGTDFDSVTSEQRRRAKAVNFGLIYGMSAFG 765

Query: 857  LANQLGIGREEASAYIRKYFERFPGIRDYMEQTKTFVRANGHVETIFGRICHFPAVASKN 916
            LA QL I R EA  YI  YF R+PG+  YME+T+      G+V T+FGR  + P +  +N
Sbjct: 766  LARQLDIPRNEAQTYIDTYFARYPGVLRYMEETRASAADLGYVSTLFGRRLYLPEIRDRN 825

Query: 917  PSERAFVERQAINAPIQGSAADIIRRAMIRMEDALAA-ARLDVRMLLQVHDELVFEVPDA 975
               R   ER AINAP+QG+AADII++AMI + D +    + ++ M++QVHDELVFEV   
Sbjct: 826  AMRRQAAERAAINAPMQGTAADIIKKAMISIADWIKTDTQGEIAMIMQVHDELVFEVDAD 885

Query: 976  QVEAALPVITKVMVEAPHPAVQLRVPLQVDARAAGNWDEAH 1016
            + E     + ++M +    A  L V L  +A    NWDEAH
Sbjct: 886  KAETLKQKVCELMAK----AANLDVELLAEAGIGDNWDEAH 922