Pairwise Alignments

Query, 601 a.a., ABC transporter ATP-binding protein from Bifidobacterium breve UCC2003

Subject, 582 a.a., lipid A ABC transporter ATP-binding protein/permease MsbA from Pectobacterium carotovorum WPP14

 Score =  301 bits (772), Expect = 4e-86
 Identities = 179/536 (33%), Positives = 287/536 (53%), Gaps = 3/536 (0%)

Query: 56  LTKIMIDDAIPNKDLGKLAMLAGGLFCLIVIYELALRYRTVAITRVGQLMLKDMRRDLFT 115
           L K ++DD     +   L  +   +  L+++  ++    +  +  V   ++ +MRR LF+
Sbjct: 47  LLKPLLDDGFGKAERAVLIWMPLAVIGLMLMRGVSGFISSYCVAWVSGKVVMNMRRRLFS 106

Query: 116 HIQTLPFSYFDSRPHGKILIRVVNYVNTLSDALSSGLINVFSDIFTFFVTLIVMFAIDWQ 175
           HI  +P S+FD +  G +L R+      ++ + S  LI V  +  +     I+MF   WQ
Sbjct: 107 HIMGMPVSFFDQQSTGTLLSRITYDSEQVAASASGALITVVREGASIIGLFILMFYYSWQ 166

Query: 176 LALWSLVLFPVLIIWVRVLQYFQRKAYQVLSNKQSNLNAFIHESIAGVKTTQTFAREKEQ 235
           L++  +V+ P++ I +RV+    R   + + +   ++     + + G K    F  +  +
Sbjct: 167 LSIILIVIAPIVSIAMRVVSKRFRNISKNMQDTMGHVTTSTEQMLKGHKEVLMFGGQDVE 226

Query: 236 FDTFQQQQDDVRTAWMAAKHIEFLMWPGVQTISVMTIAFIYFVGITGFGGVSVTTGMLIA 295
              F Q  + +R   M       +  P +Q I+ + +AF+ +         ++T G +  
Sbjct: 227 TKRFDQVSNRMRQQGMKLVSASSISDPIIQLIASLALAFVLYAASFPSVMETLTAGTITV 286

Query: 296 FVGYANNFWNPVINIGNFYNQLVTCSAYLERIFETLDVKPEIANKPGATELPAIQGKVDF 355
                     P+ ++ N   Q     A  + +F  LD++ E     G  E+   +G+++F
Sbjct: 287 VFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDMEQE--RDTGKREIERAKGELEF 344

Query: 356 NDVVFRYEDDGRNILNLVDFHVTPGKTIALVGPTGAGKTTIVSLLSRFYDVSEGSVTIDG 415
             V F Y       L  ++ H+  GKT+ALVG +G+GK+TI SLL+RFYD+  G + +DG
Sbjct: 345 RQVNFAYPGKENLALKNINLHIPAGKTVALVGRSGSGKSTIASLLTRFYDIQSGEILLDG 404

Query: 416 HDVRDVTLESLRRQMGVMLQDTFIFSGNVRDNIRYGKLDA-TDEEIEAAAKAVHAHEFIM 474
           HD+R+  L SLR Q+ ++ Q+  +F+  + +NI Y + +  + EEIE AAK  HA +FI 
Sbjct: 405 HDLREYRLSSLRNQVALVSQNVHLFNDTIANNIAYARNEHYSREEIERAAKMAHAMDFIN 464

Query: 475 ELPDGYDTTVEERGSTLSAGQRQLIAFARVLLADPRILILDEATSNIDTRTEEALQAGLR 534
           ++  G DT + E G  LS GQRQ IA AR LL D  ILILDEATS +DT +E A+QA L 
Sbjct: 465 KMDHGLDTVIGENGVMLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALD 524

Query: 535 HLLKGRTSFIIAHRLSTIENADQIFYIDHGQIVEHGTHAELLEAKGAYYRLYESQY 590
            L K RT+ +IAHRLSTIE AD+I  I+ G+I+E G HA LL A GAY +L+  Q+
Sbjct: 525 ELQKDRTAVVIAHRLSTIEKADEILVIEDGRIIERGNHAALLAANGAYAQLHRMQF 580