Pairwise Alignments

Query, 499 a.a., DNA repair protein RadA from Bifidobacterium breve UCC2003

Subject, 460 a.a., predicted repair protein (NCBI) from Escherichia coli BW25113

 Score =  327 bits (839), Expect = 4e-94
 Identities = 183/494 (37%), Positives = 278/494 (56%), Gaps = 42/494 (8%)

Query: 1   MAKSSVQ-YVCSECGWNGPKWYGRCPECGQWGTVEEFHEARPAAGSHTAAPGRTSRTRSA 59
           MAK+  + +VC+ECG + P+W G+C  C  W T+ E    R AA    A   R S    +
Sbjct: 1   MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITE---VRLAASPMVARNERLSGYAGS 57

Query: 60  AVPDTARAAAKPITEIGTETVERLGTGFSEFDRVLGGGVVPGSVTLIAGEPGIGKSTLLL 119
           A      A  + +++I  E + R  TGF EFDRVLGGGVVPGS  LI G PG GKSTLLL
Sbjct: 58  A----GVAKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLL 113

Query: 120 QTAGNIARTVAEGQTINAAGRGQSSHRPSGLASTRAHTVLYISGEESQAQVRLRATRINA 179
           QT   +A+ +                             LY++GEES  QV +RA R+  
Sbjct: 114 QTLCKLAQQMK---------------------------TLYVTGEESLQQVAMRAHRLGL 146

Query: 180 VEPNLLLAATTDLATVLGLIEQNKPALAIVDSAQTIVSQEVDGISGGSTQVREVASALID 239
              NL + + T +  +  + E+ +P L ++DS Q +   +V    G   QVRE A+ L  
Sbjct: 147 PTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTR 206

Query: 240 TAKTLDIPVFLVGHVTKDGSIAGPRTLEHLVDVVCQFEGDSETALRMLRAAKNRFGPTDE 299
            AKT  + + +VGHVTKDGS+AGP+ LEH +D     +GD+++  R LR+ KNRFG  +E
Sbjct: 207 FAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSVLLDGDADSRFRTLRSHKNRFGAVNE 266

Query: 300 VGCFDMSGEGIEEVTDPAGLFLSGDGPESANDAPVEGTCVTFTLDGHRSLPIEVQALVTN 359
           +G F M+ +G+ EV++P+ +FL      S  D    G+ V    +G R L +E+QALV +
Sbjct: 267 LGVFAMTEQGLREVSNPSAIFL------SRGDEVTSGSSVMVVWEGTRPLLVEIQALVDH 320

Query: 360 SVLPTPRRAVNGVDPSRIAMLVAVLYRHSKLNLLSNDLYISTIAGGQAKEPGSDLAIVGA 419
           S++  PRR   G++ +R+A+L+AVL+RH  L +   D++++ + G +  E  +DLA++ A
Sbjct: 321 SMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVGGVKVTETSADLALLLA 380

Query: 420 LASAATSKPIARSTCAIGEISLTGQVRPVPRMEYRLREAARLGFTTAVIPPLRKPVHV-D 478
           + S+   +P+ +     GE+ L G++RPVP  + R+ EAA+ GF  A++P    P    +
Sbjct: 381 MVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAANVPKKAPE 440

Query: 479 GLKLVEASTLADAL 492
           G+++     L+DAL
Sbjct: 441 GMQIFGVKKLSDAL 454